YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15826582
Organism:	Escherichia coli
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15826582.

Description	E-value	Query Range	Subject Range
gi\|114045851, gi... - gi\|78689367\|ref\|ZP_00854030.1\| transcriptional regulator, LysR family [Shewanella sp. MR-7], gi\|7851...	198.0	[0..1]	[209..88]
SO0369 - transcriptional regulator LysR family gi\|24345816, gi\|... - gi\|24371967\|ref\|NP_716009.1\| LysR family transcriptional regulator [Shewanella oneidensis MR-1], gi\|...	198.0	[0..1]	[210..88]
gi\|117614564, gi... - gi\|78685922\|ref\|ZP_00850696.1\| transcriptional regulator, LysR family [Shewanella sp. ANA-3], gi\|785...	198.0	[0..1]	[209..88]
gi\|27367995, gi\|... - gi\|27367995\|ref\|NP_763522.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359568\|gb\|AAO...	196.0	[0..2]	[212..90]
gi\|37200667, gi\|... - gi\|37676126\|ref\|NP_936522.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200667\|dbj\|BA...	195.0	[0..2]	[212..90]
gi\|91191158, gi\|... - gi\|91224247\|ref\|ZP_01259510.1\| putative transcription regulator protein [Vibrio alginolyticus 12G01]...	195.0	[0..2]	[212..89]
gi\|28900071, gi\|... - gi\|28900071\|ref\|NP_799726.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD ... gi\|28808354 - gi\|28808354\|dbj\|BAC61559.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD 2...	194.0	[0..2]	[212..89]
gi\|82406257, gi\|... - gi\|82495665\|ref\|ZP_00881239.1\| transcriptional regulator, LysR family [Shewanella sp. MR-4], gi\|8240...	194.0	[0..1]	[208..88]
gi\|77811547, gi\|... - gi\|77813456\|ref\|ZP_00812731.1\| regulatory protein, LysR:LysR, substrate-binding [Shewanella putrefac...	194.0	[0..1]	[207..88]
gi\|116185384, gi... - gi\|75856032\|ref\|ZP_00763668.1\| COG0583: Transcriptional regulator [Vibrio sp. Ex25], gi\|254227935\|re...	193.0	[0..2]	[212..89]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETMSGPLHIG LIPTVGPYLL PHIIPMLHQT FPKLEMYLHE AQTHQLLAQL DSGKLDAVIL  60
   61 ALVKESEAFI EVPLFDEPML LAIYEDHPWA NREAVPMADL AGEKLLMLED GHCLRDQAMG 120
  121 FCFEAGADED THFRATSLET LRNMVAAGSG ITLLPALAVP PERKRDGVVY LPAIKPEPRR 180
  181 TIGLVYRPGS PLRSRYEQLA EAIRARMDGH FDKVLKQAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1i6aA
Description:	Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits