YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9955094
Organism:	Homo sapiens
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9955094.

Description	E-value	Query Range	Subject Range
gi\|26335321 - gi\|26335321\|dbj\|BAC31361.1\| unnamed protein product [Mus musculus]	145.0	[0..1]	[127..607]
COL12_RAT - Collectin-12 OS=Rattus norvegicus GN=Colec12 PE=2 SV=1	144.0	[0..1]	[127..607]
gi\|109082372 - gi\|109082372\|ref\|XP_001091462.1\| PREDICTED: aggrecan 1 [Macaca mulatta]	144.0	[0..1]	[126..1334]
gi\|4878035, gi\|4... - gi\|4878035\|gb\|AAD24546.2\| neurocan core protein precursor [Gallus gallus], gi\|45382043\|ref\|NP_990071...	143.0	[0..1]	[126..1056]
gi\|76620846 - gi\|76620846\|ref\|XP_872507.1\| PREDICTED: neurocan isoform 2 [Bos taurus]	142.0	[0..1]	[126..1114]
gi\|73986046 - gi\|73986046\|ref\|XP_541924.2\| PREDICTED: similar to Neurocan core protein precursor (Chondroitin sulf...	142.0	[0..1]	[126..1093]

Back

Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPVNWVEHER SCYWFSRSGK AWADADNYCR LEDAHLVVVT SWEEQKFVQH HIGPVNTWMG  60
   61 LHDQNGPWKW VDGTDYETGF KNWRPEQPDD WYGHGLGGGE DCAHFTDDGR WNDDVCQRPY 120
  121 RWVCETEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1dv8A
Description:	H1 subunit of the asialoglycoprotein receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.32080401553436	bayes_pls_golite062009
receptor activity	1.29922283542261	bayes_pls_golite062009
transmembrane receptor activity	1.04311436665141	bayes_pls_golite062009
signal transducer activity	0.59811626730292	bayes_pls_golite062009
molecular transducer activity	0.59811626730292	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: