YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4558094, gi\|4...
Organism:	Homo sapiens
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4558094, gi|4....

Description	E-value	Query Range	Subject Range
gi\|2134389, gi\|3... - gi\|312217\|emb\|CAA79509.1\| Cek8 protein [Gallus gallus], pir\|\|I50617 protein-tyrosine kinase (EC 2.7....	114.0	[0..1]	[82..766]
gi\|74005797 - gi\|74005797\|ref\|XP_536084.2\| PREDICTED: similar to Ephrin type-A receptor 4 precursor (Tyrosine-prot...	113.0	[0..1]	[82..944]
EPHA7 - EPH receptor A7	113.0	[0..1]	[82..915]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKTRPDYTS FNTVDEWLEA IKMGQYKESF ANAGFTSFDV VSQMMMEDIL RVGVTLAGHQ  60
   61 KKILNSIQVM RAQMNQIQSV EV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1b4fA
Description:	EphB2 receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.633600780660145	bayes_pls_golite062009
protein binding	0.29861856894481	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: