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View Structure Prediction Details

Protein: gi|7245439
Organism: Homo sapiens
Length: 76 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7245439.

Description E-value Query
Range		 Subject
Range
gi|114623634 - gi|114623634|ref|XP_001136079.1| PREDICTED: regulatory factor X3 isoform 3 [Pan troglodytes]
 149.0 [0..1] [75..158]
gi|73946694 - gi|73946694|ref|XP_861094.1| PREDICTED: similar to regulatory factor X3 isoform b isoform 4 [Canis f...
 149.0 [0..1] [75..158]
RFX2_MOUSE - DNA-binding protein RFX2 OS=Mus musculus GN=Rfx2 PE=2 SV=1
 149.0 [0..1] [75..169]
RFX2_RAT - DNA-binding protein RFX2 OS=Rattus norvegicus GN=Rfx2 PE=1 SV=1
 148.0 [0..1] [75..169]
gi|109123086 - gi|109123086|ref|XP_001086741.1| PREDICTED: regulatory factor X, 2 (influences HLA class II expressi...
 148.0 [0..1] [75..174]
gi|76622082 - gi|76622082|ref|XP_614252.2| PREDICTED: similar to regulatory factor X2 isoform b [Bos taurus]
 148.0 [0..1] [75..300]

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Predicted Domain #1
Region A:
Residues: [1-76] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVQWLLDNYE TAEGVSLPRS TLYNHYLLHS QEQKLEPVNA ASFGKLIRSV FMGLRTRRLG  60
   61 TRGNSKYHYY GLRIKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1dp7P
Description: Class II MHC transcription factor RFX1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.835523092977445 bayes_pls_golite062009
transcription regulator activity 0.4843036104266 bayes_pls_golite062009
nucleic acid binding 0.37117756729668 bayes_pls_golite062009
DNA binding 0.3118855114645 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle