YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6980698, gi\|6...
Organism:	Escherichia coli
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6980698, gi|6....

Description	E-value	Query Range	Subject Range
gi\|75516113 - gi\|75516113\|ref\|ZP_00738231.1\| COG0430: RNA 3'-terminal phosphate cyclase [Escherichia coli 53638]	427.0	[0..1]	[339..1]
gi\|91212894, gi\|... - gi\|91212894\|ref\|YP_542880.1\| RNA 3'-terminal-phosphate cyclase [Escherichia coli UTI89], gi\|91074468... gi\|226902415, gi... - gi\|237703151\|ref\|ZP_04533632.1\| RNA 3'-terminal-phosphate cyclase [Escherichia sp. 3_2_53FAA], gi\|22... gi\|115514808, gi... - gi\|117625684\|ref\|YP_859007.1\| RNA 3'-terminal-phosphate cyclase [Escherichia coli APEC O1], gi\|11551...	424.0	[0..1]	[339..1]
gi\|26110450, gi\|... - gi\|26250021\|ref\|NP_756061.1\| RNA 3'-terminal-phosphate cyclase [Escherichia coli CFT073], gi\|2611045...	423.0	[0..1]	[339..1]
gi\|75179961 - gi\|75179961\|ref\|ZP_00699948.1\| COG0430: RNA 3'-terminal phosphate cyclase [Shigella boydii BS512]	422.0	[0..1]	[339..1]
gi\|81247187, gi\|... - gi\|82545776\|ref\|YP_409723.1\| RNA 3'-terminal-phosphate cyclase [Shigella boydii Sb227], gi\|81247187\|...	421.0	[0..1]	[339..1]
gi\|209756380, gi... - gi\|25329194\|pir\|\|G91161 RNA 3'-terminal phosphate cyclase [imported] - Escherichia coli (strain O157... gi\|15833517, gi\|... - gi\|15833517\|ref\|NP_312290.1\| RNA 3'-terminal-phosphate cyclase [Escherichia coli O157:H7], gi\|133637... gi\|195934910 - gi\|195934910\|ref\|ZP_03080292.1\| RNA 3'-terminal-phosphate cyclase [Escherichia coli O157:H7 str. EC4... gi\|15833517, gi\|... - gi\|15833517\|ref\|NP_312290.1\| RNA 3'-terminal-phosphate cyclase [Escherichia coli O157:H7 str. Sakai]...	420.0	[0..1]	[339..1]
EG12938 - RNA 3'-terminal phosphate cyclase / RNA 3'-terminal phosphate cyclase; 5' adenylyltransferase; physi... RTCA_ECOBW - RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rtcA PE=3 SV... RTCA_ECOLI - RNA 3'-terminal phosphate cyclase (EC 6.5.1.4) (RNA-3'-phosphate cyclase) (RNA cyclase) - Escherichi... EG12938 - RNA 3'-terminal phosphate cyclase / RNA 3'-terminal phosphate cyclase; 5' adenylyltransferase; physi... gi\|85676622, gi\|... - gi\|89110591\|ref\|AP_004371.1\| RNA 3'-terminal phosphate cyclase [Escherichia coli str. K-12 substr. W... RTCA_ECODH - RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain K12 / DH10B) GN=rtcA PE=3 SV=1 gi\|253771751, gi... - gi\|253771751\|ref\|YP_003034582.1\| RNA 3'-phosphate cyclase [Escherichia coli BL21(DE3)], gi\|253322795...	420.0	[0..2]	[339..1]
gi\|75211786 - gi\|75211786\|ref\|ZP_00711850.1\| COG0430: RNA 3'-terminal phosphate cyclase [Escherichia coli B171]	420.0	[0..1]	[339..1]
RTCA_ECOL5 - RNA 3'-terminal phosphate cyclase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rtcA PE=3 SV...	420.0	[0..2]	[339..1]
RTCA_ECOL6 - RNA 3'-terminal phosphate cyclase OS=Escherichia coli O6 GN=rtcA PE=3 SV=2 RTCA_ECOL6 - RNA 3'-terminal phosphate cyclase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=...	420.0	[0..2]	[339..1]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRMIALDG AQGEGGGQIL RSALSLSMIT GQPFTITSIR AGRAKPGLLR QHLTAVKAAT  60
   61 EICGATVEGA ELGSQRLLFR PGTVRGGDYR FAIGSAGSCT LVLQTVLPAL WFADGPSRVE 120
  121 VSGGTDNPSA PPADFIRRVL EPLLAKIGIH QQTTLLRHGF YPAGGGVVAT EVSPVASFNT 180
  181 LQLGERGNIV QMRGEVLLAG VPRHVAEREI ATLAGSFSLH EQNIHNLPRD QGPGNTVSLE 240
  241 VESENITERF FVVGEKRVSA EVVAAQLVKE VKRYLASTAA VGEYLADQLV LPMALAGAGE 300
  301 FTVAHPSCHL LTNIAVVERF LPVRFSLIET DGVTRVSIEG SHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	1qmhA
Description:	RNA 3'-terminal phosphate cyclase, RPTC, insert domain; RNA 3'-terminal phosphate cyclase, RPTC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.54689525592227	bayes_pls_golite062009
transferase activity	1.7007536630883	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	1.24131488513793	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: