YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6573641
Organism:	Escherichia coli
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6573641.

Description	E-value	Query Range	Subject Range
MUKB_PHOLL - Chromosome partition protein MukB OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / C... MUKB_PHOLL - Chromosome partition protein mukB OS=Photorhabdus luminescens subsp. laumondii GN=mukB PE=3 SV=1	224.0	[0..1]	[227..1]
gi\|42043, gi\|96190 - pir\|\|JH0228 cell division protein mukB - Escherichia coli (strain K-12, substrain W3110), gi\|42043\|e...	221.0	[0..1]	[227..1]
gi\|77979220 - gi\|77979220\|ref\|ZP_00834640.1\| COG3096: Uncharacterized protein involved in chromosome partitioning ...	219.0	[0..1]	[227..1]
MUKB_SHIDS - Chromosome partition protein MukB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mukB PE=3 SV=...	219.0	[0..1]	[227..1]
MUKB_SHIBS - Chromosome partition protein MukB OS=Shigella boydii serotype 4 (strain Sb227) GN=mukB PE=3 SV=1	219.0	[0..1]	[227..1]
gi\|75257360, gi\|... - gi\|75257360\|ref\|ZP_00728876.1\| COG3096: Uncharacterized protein involved in chromosome partitioning ...	219.0	[0..1]	[227..1]
gi\|194428393, gi... - gi\|75210386\|ref\|ZP_00710542.1\| COG3096: Uncharacterized protein involved in chromosome partitioning ...	219.0	[0..1]	[227..1]
EG10618 - chromosome condensin MukBEF, ATPase and DNA-binding subunit / Chromosome condensin MukBEF, ATPase an... MUKB_ECOLI - Chromosome partition protein mukB (Structural maintenance of chromosome-related protein) - Escherich... gi\|1651448, gi\|8... - gi\|89107774\|ref\|AP_001554.1\| fused chromosome partitioning proteins [Escherichia coli str. K-12 subs... MUKB_ECOBW - Chromosome partition protein MukB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=mukB PE=3 SV... MUKB_ECODH - Chromosome partition protein MukB OS=Escherichia coli (strain K12 / DH10B) GN=mukB PE=3 SV=1 EG10618 - chromosome condensin MukBEF, ATPase and DNA-binding subunit / Chromosome condensin MukBEF, ATPase an...	219.0	[0..1]	[227..1]
gi\|192955930, gi... - gi\|75234393\|ref\|ZP_00718754.1\| COG3096: Uncharacterized protein involved in chromosome partitioning ...	219.0	[0..1]	[227..1]
MUKB_ECOL6 - Chromosome partition protein MukB OS=Escherichia coli O6 GN=mukB PE=3 SV=1 gi\|227838863, gi... - gi\|227884111\|ref\|ZP_04001916.1\| cell division protein MukB [Escherichia coli 83972], gi\|227838863\|gb... MUKB_ECOL6 - Chromosome partition protein MukB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=...	219.0	[0..1]	[227..1]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIERGKFRSL TLINWNGFFA RTFDLDELVT TLSGGNGAGK STTMAAFVTA LIPDLTLLHF  60
   61 RNTTEAGATS GSRDKGLHGK LKAGVCYSML DTINSRHQRV VVGVRLQQVA GRDRKVDIKP 120
  121 FAIQGLPMSV QPTQLVTETL NERQARVLPL NELKDKLEAM EGVQFKQFNS ITDYHSLMFD 180
  181 LGIIARRLRS ASDRSKFYRL IEASLYGGIS SAITRSLRDY LLPENSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	1qhlA
Description:	Cell division protein MukB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: