YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3659935, gi\|3...
Organism:	Homo sapiens
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3659935, gi|3....

Description	E-value	Query Range	Subject Range
gi\|186468985, gi... - gi\|23124578\|ref\|ZP_00106558.1\| COG4886: Leucine-rich repeat (LRR) protein [Nostoc punctiforme PCC 73...	161.0	[0..2]	[176..25]
gi\|68404433 - gi\|68404433\|ref\|XP_694901.1\| PREDICTED: similar to cubilin, partial [Danio rerio]	159.0	[0..8]	[175..3046]
gi\|76161988 - gi\|76161988\|gb\|ABA40082.1\| variable lymphocyte receptor diversity region [Petromyzon marinus]	152.0	[0..2]	[176..34]
FBpp0300846 - type=protein; loc=3R:join(22363345..22363506,22370765..22370882,22380079..22380661,22380955..2238137...	152.0	[0..2]	[175..65]
gi\|75907715, gi\|... - gi\|75907715\|ref\|YP_322011.1\| small GTP-binding protein domain-containing protein [Anabaena variabili...	152.0	[0..2]	[175..177]
gi\|17227620, gi\|... - gi\|17227620\|ref\|NP_484168.1\| leucine-rich repeat-containing protein [Nostoc sp. PCC 7120], gi\|171351... gi\|25531208 - pir\|\|AD1822 leucine-rich-repeat protein [imported] - Nostoc sp. (strain PCC 7120)	151.0	[0..2]	[176..131]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLTAELIE QAAQYTNAVR DRELDLRGYK IPVIENLGAT LDQFDAIDFS DNEIRKLDGF  60
   61 PLLRRLKTLL VNNNRICRIG EGLDQALPDL TELILTNNSL VELGDLDPLA SLKSLTYLCI 120
  121 LRNPVTNKKH YRLYVIYKVP QVRVLDFQKV KLKERQEAEK MFKGKRGAQL AKDIAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.154902
Match:	1a9nA
Description:	Splicesomal U2A' protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits