YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1942553, gi\|1...
Organism:	Homo sapiens
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1942553, gi|1....

Description	E-value	Query Range	Subject Range
gi\|208138 - gi\|208138\|gb\|AAA73218.1\| Col-CTAP-III(Leu21) fusion protein [unidentified cloning vector]	97.0	[0..1]	[75..517]
gi\|346457 - pir\|\|B44253 alveolar macrophage chemotactic factor-II (AMCF-II) intercrine-alpha protein - pig AMC2_PIG - Alveolar macrophage chemotactic factor 2 OS=Sus scrofa PE=1 SV=2	96.0	[0..1]	[75..43]
gi\|109074508 - gi\|109074508\|ref\|XP_001091688.1\| PREDICTED: similar to Growth-regulated protein alpha precursor (CXC...	93.0	[0..2]	[70..146]
gi\|114650280 - gi\|114650280\|dbj\|BAF31887.1\| CXC chemokine CXCL3 [Macaca fascicularis]	92.0	[0..2]	[73..35]
GROA_RAT - Growth-regulated alpha protein OS=Rattus norvegicus GN=Cxcl1 PE=1 SV=2	91.0	[0..2]	[69..25]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSDLYAELRC LCIKTTSGIH PKNIQSLEVI GKGTHCNQVE VIATLKDGRK ICLDPDAPRI  60
   61 KKIVQKKLAG DESAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.221849
Match:	1f9pA
Description:	CRYSTAL STRUCTURE OF CONNECTIVE TISSUE ACTIVATING PEPTIDE-III(CTAP-III) COMPLEXED WITH POLYVINYLSULFONIC ACID
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.3900020421144	bayes_pls_golite062009
protein binding	1.08080878723934	bayes_pls_golite062009
receptor binding	0.76867241822245	bayes_pls_golite062009
cytokine activity	0.53309192942479	bayes_pls_golite062009
G-protein-coupled receptor binding	0.32020721127886	bayes_pls_golite062009
chemokine activity	0.26786878228995	bayes_pls_golite062009
chemokine receptor binding	0.26786878228995	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: