YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2098470, gi\|1...
Organism:	Escherichia coli
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2098470, gi|1....

Description	E-value	Query Range	Subject Range
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	144.0	[0..3]	[106..132]
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	143.0	[0..1]	[109..138]
gi\|7474358, gi\|4... - pir\|\|T31680 bacR protein - Bacillus licheniformis, gi\|4481749\|gb\|AAD21216.2\| BacR [Bacillus lichenif...	143.0	[0..1]	[106..128]
gi\|89893100, gi\|... - gi\|89893100\|ref\|YP_516587.1\| hypothetical protein DSY0354 [Desulfitobacterium hafniense Y51], gi\|893... gi\|219666356, gi... - gi\|68209119\|ref\|ZP_00561180.1\| Response regulator receiver:Transcriptional regulatory protein, C ter...	142.0	[0..2]	[104..125]
gi\|82502198 - gi\|82502198\|gb\|ABB80126.1\| SubR [Bacillus subtilis]	142.0	[0..1]	[106..128]
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	142.0	[0..1]	[109..130]
gi\|229497231, gi... - gi\|229497231\|ref\|ZP_04390932.1\| two component transcriptional regulator, winged helix family [Geobac... gi\|56421267, gi\|... - gi\|56421267\|ref\|YP_148585.1\| two-component response regulator (phosphate regulation) [Geobacillus ka... gi\|221088131, gi... - gi\|221088131\|ref\|ZP_03557664.1\| two component transcriptional regulator, winged helix family [Geobac...	142.0	[0..2]	[106..127]
gi\|148566409, gi... - gi\|148654299\|ref\|YP_001274504.1\| two component transcriptional regulator [Roseiflexus sp. RS-1], gi\|...	141.0	[0..1]	[105..125]
gi\|89952943, gi\|... - gi\|90023343\|ref\|YP_529170.1\| two component transcriptional regulator [Saccharophagus degradans 2-40]...	140.0	[0..1]	[103..128]
gi\|116333280, gi... - gi\|116333280\|ref\|YP_794807.1\| DNA-binding response regulator [Lactobacillus brevis ATCC 367], gi\|116...	140.0	[0..2]	[104..130]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APSQEEAVIA FGKFKLNLGT REMFREDEPM PLTSGEFAVL KALVSHPREP LSRDKLMNLA  60
   61 RGREYSAMER SIDVQISRLR RMVEEDPAHP RYIQTVWGLG YVFVPDGSKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1oddA
Description:	OMPR C-TERMINAL DOMAIN (OMPR-C) FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	0.87277912634754	bayes_pls_golite062009
binding	0.508237054763405	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: