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View Structure Prediction Details

Protein: gi|157830854, gi...
Organism: Homo sapiens
Length: 77 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157830854, gi....

Description E-value Query
Range		 Subject
Range
gi|28894125 - gi|28894125|gb|AAO52735.1| monocyte chemoattractant protein-3 [Macaca nemestrina]
 105.0 [0..2] [76..34]
gi|109113969 - gi|109113969|ref|XP_001113381.1| PREDICTED: similar to Small inducible cytokine A7 precursor (CCL7) ...
 103.0 [0..2] [76..30]
gi|27228299 - gi|27228299|gb|AAN85636.1| monocyte chemoattractant protein-1 [Sigmodon hispidus]
 103.0 [0..2] [77..25]
gi|6435770 - gi|6435770|pdb|1BO0| Chain , Monocyte Chemoattractant Protein-3, Nmr, Minimized Average Structure
 102.0 [0..1] [76..4]
gi|6531363 - gi|6531363|gb|AAF15379.1|AF065929_1 small inducible cytokine A2 precursor [Mus musculus]
 102.0 [0..2] [76..24]
gi|55531 - gi|55531|emb|CAA34901.1| JE product [Rattus sp.]
CCL2_RAT - C-C motif chemokine 2 OS=Rattus norvegicus GN=Ccl2 PE=2 SV=1
 102.0 [0..2] [77..24]

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Predicted Domain #1
Region A:
Residues: [1-77] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPDAINAPV TCCYNFTNRK ISVQRLASYR RITSSKCPKE AVIFKTIVAK EICADPKQKW  60
   61 VQDSMDHLDK QTQTPKT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.39794
Match: 1dokA
Description: Monocyte chemoattractant protein-1 (MCP-1, MCAF)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.3900020421144 bayes_pls_golite062009
protein binding 1.08080878723934 bayes_pls_golite062009
receptor binding 0.76867241822245 bayes_pls_golite062009
cytokine activity 0.53309192942479 bayes_pls_golite062009
G-protein-coupled receptor binding 0.32020721127886 bayes_pls_golite062009
chemokine activity 0.26786878228995 bayes_pls_golite062009
chemokine receptor binding 0.26786878228995 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle