YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2098520, gi\|1...
Organism:	Chromobacterium viscosum
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2098520, gi|1....

Description	E-value	Query Range	Subject Range
gi\|67464316, gi\|... - gi\|67464317\|pdb\|1YS2\|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic Acid (S) ...	236.0	[0..1]	[319..1]
gi\|576296, gi\|57... - gi\|576298\|pdb\|1TAH\|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From Pseudomonas Gluma...	234.0	[0..2]	[319..1]
gi\|243480 - gi\|243480\|gb\|AAC60400.1\| lipase [Pseudomonas] gi\|77815, gi\|216899 - gi\|77815\|pir\|\|JT0579 triacylglycerol lipase (EC 3.1.1.3) precursor - Pseudomonas sp, gi\|216899\|dbj\|B... gi\|10638019 - gi\|10638019\|emb\|CAC11021.1\| lipase [synthetic construct] LIP_PSES5 - Lipase OS=Pseudomonas sp. (strain KWI-56) GN=lip PE=1 SV=1	233.0	[0..2]	[319..46]
gi\|84354072 - gi\|84354072\|ref\|ZP_00978988.1\| COG1075: Predicted acetyltransferases and hydrolases with the alpha/b...	230.0	[0..2]	[319..33]
gi\|77970905, gi\|... - gi\|78063020\|ref\|YP_372928.1\| triacylglycerol lipase [Burkholderia sp. 383], gi\|77970905\|gb\|ABB12284....	230.0	[0..1]	[319..45]
gi\|225932179, gi... - gi\|226195694\|ref\|ZP_03791281.1\| triacylglycerol lipase [Burkholderia pseudomallei Pakistan 9], gi\|22... gi\|254301229, gi... - gi\|83680323\|ref\|ZP_00942030.1\| COG1075: Predicted acetyltransferases and hydrolases with the alpha/b... gi\|254184948, gi... - gi\|99911132\|ref\|ZP_01318048.1\| hypothetical protein Bpse1_03002556 [Burkholderia pseudomallei 1655],... gi\|82531315 - gi\|82531315\|ref\|ZP_00890535.1\| COG1075: Predicted acetyltransferases and hydrolases with the alpha/b... gi\|167907477 - gi\|167907477\|ref\|ZP_02494682.1\| Lipase precursor [Burkholderia pseudomallei NCTC 13177] gi\|242134350, gi... - gi\|90662444\|ref\|ZP_01250278.1\| hypothetical protein Bpse110_02005668 [Burkholderia pseudomallei 1106... gi\|157933860, gi... - gi\|67755633\|ref\|ZP_00494525.1\| COG1075: Predicted acetyltransferases and hydrolases with the alpha/b... gi\|134278317, gi... - gi\|134278317\|ref\|ZP_01765031.1\| lipase [Burkholderia pseudomallei 305], gi\|134250101\|gb\|EBA50181.1\| ... gi\|67684997, gi\|... - gi\|90293702\|ref\|ZP_01213301.1\| hypothetical protein Bpse17_02001558 [Burkholderia pseudomallei 1710a... gi\|67740246 - gi\|67740246\|ref\|ZP_00490747.1\| COG1075: Predicted acetyltransferases and hydrolases with the alpha/b... gi\|167724563 - gi\|167724563\|ref\|ZP_02407799.1\| Lipase precursor [Burkholderia pseudomallei DM98] gi\|167829063 - gi\|167829063\|ref\|ZP_02460534.1\| Lipase precursor [Burkholderia pseudomallei 9] gi\|167850540 - gi\|167850540\|ref\|ZP_02476048.1\| Lipase precursor [Burkholderia pseudomallei B7210] gi\|167743517 - gi\|167743517\|ref\|ZP_02416291.1\| Lipase precursor [Burkholderia pseudomallei 14] gi\|167820703 - gi\|167820703\|ref\|ZP_02452383.1\| Lipase precursor [Burkholderia pseudomallei 91]	229.0	[0..2]	[319..37]
gi\|67665053, gi\|... - gi\|67665053\|ref\|ZP_00462321.1\| Triacylglycerol lipase [Burkholderia cenocepacia HI2424], gi\|67101408... gi\|67661402, gi\|... - gi\|67661402\|ref\|ZP_00458702.1\| Triacylglycerol lipase [Burkholderia cenocepacia AU 1054], gi\|6709101...	228.0	[0..2]	[319..46]
gi\|83717248, gi\|... - gi\|83717248\|ref\|YP_438838.1\| lipase [Burkholderia thailandensis E264], gi\|83651073\|gb\|ABC35137.1\| li...	228.0	[0..2]	[319..46]

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Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADTYAATRYP VILVHGLAGT DKFANVVDYW YGIQSDLQSH GAKVYVANLS GFQSDDGPNG  60
   61 RGEQLLAYVK QVLAATGATK VNLIGHSQGG LTSRYVAAVA PQLVASVTTI GTPHRGSEFA 120
  121 DFVQDVLKTD PTGLSSTVIA AFVNVFGTLV SSSHNTDQDA LAALRTLTTA QTATYNRNFP 180
  181 SAGLGAPGSC QTGAATETVG GSQHLLYSWG GTAIQPTSTV LGVTGATDTS TGTLDVANVT 240
  241 DPSTLALLAT GAVMINRASG QNDGLVSRCS SLFGQVISTS YHWNHLDEIN QLLGVRGANA 300
  301 EDPVAVIRTH VNRLKLQGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.221849
Match:	1cvlA
Description:	CRYSTAL STRUCTURE OF BACTERIAL LIPASE FROM CHROMOBACTERIUM VISCOSUM ATCC 6918
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.76673721118052	bayes_pls_golite062009
hydrolase activity	1.64928663394	bayes_pls_golite062009
carboxylesterase activity	0.73967567655491	bayes_pls_golite062009
lipase activity	0.51002916472898	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.112278861211575	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: