YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3318710, gi\|3...
Organism:	Homo sapiens
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3318710, gi|3....

Description	E-value	Query Range	Subject Range
gi\|14009269, gi\|... - gi\|45383858\|ref\|NP_989457.1\| sterol regulatory element binding transcription factor 1 [Gallus gallus...	106.0	[0..1]	[82..295]
gi\|47215017 - gi\|47215017\|emb\|CAG03157.1\| unnamed protein product [Tetraodon nigroviridis]	105.0	[0..2]	[82..361]
gi\|73956050 - gi\|73956050\|ref\|XP_536664.2\| PREDICTED: similar to sterol regulatory element binding transcription f...	103.0	[0..1]	[82..320]
SRBP1_PIG - Sterol regulatory element-binding protein 1 OS=Sus scrofa GN=SREBF1 PE=2 SV=2	103.0	[0..1]	[82..320]
SREBF1 - sterol regulatory element binding transcription factor 1	102.0	[0..1]	[82..319]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSRGEKRTAH NAIEKRYRSS INDKIIELKD LVVGTEAKLN KSAVLRKAID YIRFLQHSNQ  60
   61 KLKQENLSLR TAVHKSKSLK DL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.09691
Match:	1am9A
Description:	SREBP-1a
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.12507195426228	bayes_pls_golite062009
nucleic acid binding	0.43204604575196	bayes_pls_golite062009
DNA binding	0.40884226851256	bayes_pls_golite062009
transcription regulator activity	0.31759335140578	bayes_pls_golite062009
transcription factor activity	0.09721565916723	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: