| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.710214520741] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| FRE2 |
|
|
|
| FRE4 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| iron ion transport | 7.7306E-6 | 2 | 18 | 2 | 6292 |
| di-, tri-valent inorganic cation transport | 2.5061E-5 | 2 | 32 | 2 | 6292 |
| transition metal ion transport | 4.5626E-5 | 2 | 43 | 2 | 6292 |
| metal ion transport | 8.3521E-5 | 2 | 58 | 2 | 6292 |
| cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
| ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| siderophore-iron transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| iron assimilation by chelation and transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| iron assimilation | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| copper ion transmembrane transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| iron chelate transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| copper ion import | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| siderophore transport | 2.859E-3 | 2 | 9 | 1 | 6292 |
| copper ion transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor | 1.4147E-6 | 2 | 8 | 2 | 6292 |
| ferric-chelate reductase activity | 1.4147E-6 | 2 | 8 | 2 | 6292 |
| oxidoreductase activity, oxidizing metal ions | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| oxidoreductase activity | 1.9877E-3 | 2 | 281 | 2 | 6292 |