| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.748846745831] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| microtubule organizing center | 9.8679E-5 | 2 | 63 | 2 | 6292 |
| spindle pole body | 9.8679E-5 | 2 | 63 | 2 | 6292 |
| spindle pole | 1.151E-4 | 2 | 68 | 2 | 6292 |
| spindle | 1.9786E-4 | 2 | 89 | 2 | 6292 |
| microtubule cytoskeleton | 2.8118E-4 | 2 | 106 | 2 | 6292 |
| intermediate layer of spindle pole body | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| cytoskeletal part | 1.0156E-3 | 2 | 201 | 2 | 6292 |
| cytoskeleton | 1.1732E-3 | 2 | 216 | 2 | 6292 |
| central plaque of spindle pole body | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| DASH complex | 3.811E-3 | 2 | 12 | 1 | 6292 |
| microtubule organizing center part | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| spindle microtubule | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| microtubule | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| microtubule nucleation | 1.2783E-5 | 2 | 23 | 2 | 6292 |
| microtubule cytoskeleton organization | 2.3525E-4 | 2 | 97 | 2 | 6292 |
| microtubule-based process | 3.0847E-4 | 2 | 111 | 2 | 6292 |
| cytoskeleton organization | 1.3422E-3 | 2 | 231 | 2 | 6292 |
| spindle pole body duplication in nuclear envelope | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| spindle pole body duplication | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| regulation of microtubule cytoskeleton organization | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| spindle pole body organization | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| regulation of microtubule polymerization or depolymerization | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| regulation of microtubule-based process | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| microtubule organizing center organization | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| microtubule polymerization or depolymerization | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| cell cycle process | 6.0534E-3 | 2 | 490 | 2 | 6292 |
| regulation of cytoskeleton organization | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| cell cycle | 6.95E-3 | 2 | 525 | 2 | 6292 |
| mitotic spindle organization in nucleus | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| structural constituent of cytoskeleton | 6.9626E-5 | 2 | 53 | 2 | 6292 |
| structural molecule activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |