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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.78156047437]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
RGT2
  • plasma membrane
    		•
  • response to glucose stimulus
  • signal transduction
    		•
  • glucose binding
  • receptor activity
  • glucose transmembrane transporter activity
    		•
    SNF3
  • plasma membrane
    		•
  • response to glucose stimulus
  • signal transduction
    		•
  • glucose binding
  • receptor activity
  • glucose transmembrane transporter activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    plasma membrane 1.8077E-3 2 268 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    response to monosaccharide stimulus 5.0527E-7 2 5 2 6292
    response to hexose stimulus 5.0527E-7 2 5 2 6292
    response to glucose stimulus 5.0527E-7 2 5 2 6292
    response to carbohydrate stimulus 7.579E-7 2 6 2 6292
    response to organic substance 4.7071E-4 2 137 2 6292
    signal transduction 1.1516E-3 2 214 2 6292
    signaling process 1.1841E-3 2 217 2 6292
    signal transmission 1.1841E-3 2 217 2 6292
    signaling 1.598E-3 2 252 2 6292
    response to chemical stimulus 3.6769E-3 2 382 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    glucose binding 5.0527E-8 2 2 2 6292
    monosaccharide binding 7.579E-7 2 6 2 6292
    sugar binding 1.0611E-6 2 7 2 6292
    carbohydrate binding 1.4147E-6 2 8 2 6292
    receptor activity 4.5979E-6 2 14 2 6292
    glucose transmembrane transporter activity 7.7306E-6 2 18 2 6292
    monosaccharide transmembrane transporter activity 1.0611E-5 2 21 2 6292
    hexose transmembrane transporter activity 1.0611E-5 2 21 2 6292
    sugar transmembrane transporter activity 1.2783E-5 2 23 2 6292
    carbohydrate transmembrane transporter activity 2.1979E-5 2 30 2 6292
    molecular transducer activity 1.5966E-4 2 80 2 6292
    signal transducer activity 1.5966E-4 2 80 2 6292
    substrate-specific transmembrane transporter activity 1.7943E-3 2 267 2 6292
    transmembrane transporter activity 2.3578E-3 2 306 2 6292
    substrate-specific transporter activity 2.8436E-3 2 336 2 6292
    transporter activity 4.1132E-3 2 404 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle