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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.98370263807]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
MRPS12
  • mitochondrion
  • mitochondrial small ribosomal subunit
  • ribosome
    		•
  • translation
    		•
  • structural constituent of ribosome
    		•
    PET123
  • mitochondrion
  • mitochondrial small ribosomal subunit
    		•
  • translation
    		•
  • structural constituent of ribosome
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    organellar small ribosomal subunit 3.0063E-5 2 35 2 6292
    mitochondrial small ribosomal subunit 3.0063E-5 2 35 2 6292
    small ribosomal subunit 1.3278E-4 2 73 2 6292
    organellar ribosome 2.0236E-4 2 90 2 6292
    mitochondrial ribosome 2.0236E-4 2 90 2 6292
    mitochondrial matrix 7.7811E-4 2 176 2 6292
    mitochondrial lumen 7.7811E-4 2 176 2 6292
    ribosomal subunit 8.4142E-4 2 183 2 6292
    ribosome 2.1173E-3 2 290 2 6292
    mitochondrial part 5.6881E-3 2 475 2 6292
    ribonucleoprotein complex 6.6615E-3 2 514 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    translation 3.5621E-3 2 376 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    structural constituent of ribosome 1.1301E-3 2 212 2 6292
    structural molecule activity 2.8947E-3 2 339 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle