| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.986084659049] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| YCK2 |
|
|
|
| YCK3 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein amino acid phosphorylation | 2.6542E-4 | 2 | 103 | 2 | 6292 |
| phosphorylation | 8.0494E-4 | 2 | 179 | 2 | 6292 |
| phosphorus metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| phosphate metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| response to glucose stimulus | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| response to monosaccharide stimulus | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| response to hexose stimulus | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| response to carbohydrate stimulus | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| post-translational protein modification | 3.2108E-3 | 2 | 357 | 2 | 6292 |
| protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| casein kinase I activity | 3.0316E-7 | 2 | 4 | 2 | 6292 |
| obsolete_molecular_function | 1.1854E-4 | 2 | 69 | 2 | 6292 |