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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.05078316118]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cellular bud neck 4.1715E-4 2 129 2 6292
cellular bud 6.9196E-4 2 166 2 6292
site of polarized growth 7.0879E-4 2 168 2 6292
polarisome 1.9064E-3 2 6 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Rho protein signal transduction 9.6001E-6 2 20 2 6292
Ras protein signal transduction 4.1432E-5 2 41 2 6292
small GTPase mediated signal transduction 1.0186E-4 2 64 2 6292
intracellular signal transduction 3.312E-4 2 115 2 6292
intracellular signaling pathway 5.2022E-4 2 144 2 6292
signaling pathway 8.5067E-4 2 184 2 6292
signal transduction 1.1516E-3 2 214 2 6292
signal transmission 1.1841E-3 2 217 2 6292
signaling process 1.1841E-3 2 217 2 6292
regulation of initiation of mating projection growth 1.2712E-3 2 4 1 6292
signaling 1.598E-3 2 252 2 6292
regulation of termination of mating projection growth 1.9064E-3 2 6 1 6292
regulation of cell projection organization 2.224E-3 2 7 1 6292
regulation of mating projection assembly 2.224E-3 2 7 1 6292
regulation of cell projection assembly 2.224E-3 2 7 1 6292
regulation of cell morphogenesis 2.859E-3 2 9 1 6292
mating projection assembly 3.1764E-3 2 10 1 6292
regulation of response to stimulus 3.1764E-3 2 10 1 6292
cell projection assembly 3.4937E-3 2 11 1 6292
cell projection organization 3.4937E-3 2 11 1 6292
regulation of anatomical structure morphogenesis 3.4937E-3 2 11 1 6292
regulation of developmental process 3.4937E-3 2 11 1 6292
regulation of cellular component biogenesis 5.7138E-3 2 18 1 6292
cell morphogenesis involved in conjugation with cellular fusion 6.9813E-3 2 22 1 6292
cell morphogenesis involved in conjugation 7.6148E-3 2 24 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytoskeletal regulatory protein binding 1.9064E-3 2 6 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle