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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.09200995856]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
RPL25
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
    		•
  • ribosomal large subunit assembly
  • translation
    		•
  • RNA binding
  • structural constituent of ribosome
    		•
    RPL6A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
    		•
  • ribosomal large subunit assembly
  • translation
    		•
  • RNA binding
  • structural constituent of ribosome
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    cytosolic large ribosomal subunit 8.9432E-5 2 60 2 6292
    cytosolic ribosome 2.5516E-4 2 101 2 6292
    large ribosomal subunit 3.0291E-4 2 110 2 6292
    cytosolic part 3.7294E-4 2 122 2 6292
    ribosomal subunit 8.4142E-4 2 183 2 6292
    cytosol 2.0305E-3 2 284 2 6292
    ribosome 2.1173E-3 2 290 2 6292
    ribonucleoprotein complex 6.6615E-3 2 514 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    ribosomal large subunit assembly 4.1432E-5 2 41 2 6292
    ribosomal subunit assembly 7.5032E-5 2 55 2 6292
    ribosome assembly 1.0186E-4 2 64 2 6292
    ribosomal large subunit biogenesis 1.051E-4 2 65 2 6292
    organelle assembly 1.1854E-4 2 69 2 6292
    ribonucleoprotein complex assembly 2.1151E-4 2 92 2 6292
    cellular macromolecular complex assembly 8.3223E-4 2 182 2 6292
    cellular macromolecular complex subunit organization 1.6882E-3 2 259 2 6292
    macromolecular complex assembly 1.9877E-3 2 281 2 6292
    ribosome biogenesis 3.0157E-3 2 346 2 6292
    macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
    ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
    translation 3.5621E-3 2 376 2 6292
    cellular component assembly 3.7349E-3 2 385 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    structural constituent of ribosome 1.1301E-3 2 212 2 6292
    structural molecule activity 2.8947E-3 2 339 2 6292
    RNA binding 3.3934E-3 2 367 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle