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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.17306449026]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
PEX7
  • cytosol
  • peroxisomal matrix
    		•
  • protein targeting to peroxisome
  • peroxisome organization
    		•
  • peroxisome matrix targeting signal-2 binding
  • peroxisome targeting sequence binding
    		•
    PEX8
  • peroxisomal membrane
  • peroxisomal matrix
    		•
  • protein targeting to peroxisome
  • peroxisome organization
    		•
  • peroxisome targeting sequence binding
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    microbody lumen 4.5979E-6 2 14 2 6292
    peroxisomal matrix 4.5979E-6 2 14 2 6292
    peroxisomal part 3.0063E-5 2 35 2 6292
    microbody part 3.0063E-5 2 35 2 6292
    microbody 8.3521E-5 2 58 2 6292
    peroxisome 8.3521E-5 2 58 2 6292
    peroxisomal membrane 7.2981E-3 2 23 1 6292
    microbody membrane 7.2981E-3 2 23 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    peroxisomal transport 6.0632E-6 2 16 2 6292
    protein targeting to peroxisome 6.0632E-6 2 16 2 6292
    peroxisome organization 4.3504E-5 2 42 2 6292
    protein targeting 1.3892E-3 2 235 2 6292
    intracellular protein transport 1.6363E-3 2 255 2 6292
    protein transport 1.8213E-3 2 269 2 6292
    establishment of protein localization 1.8485E-3 2 271 2 6292
    cellular protein localization 1.8898E-3 2 274 2 6292
    cellular macromolecule localization 2.0305E-3 2 284 2 6292
    protein localization 2.3118E-3 2 303 2 6292
    macromolecule localization 3.9717E-3 2 397 2 6292
    intracellular transport 7.7118E-3 2 553 2 6292
    establishment of localization in cell 9.0494E-3 2 599 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    peroxisome targeting sequence binding 1.5158E-7 2 3 2 6292
    peptide binding 7.7306E-6 2 18 2 6292
    signal sequence binding 7.7306E-6 2 18 2 6292
    peroxisome matrix targeting signal-2 binding 3.1786E-4 2 1 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle