From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.073] [SVM Score: 0.306290197147] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
AAC3 |
|
|
|
DUR3 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
anaerobic respiration | 6.3568E-4 | 2 | 2 | 1 | 6292 |
spermidine transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
urea transport | 9.5344E-4 | 2 | 3 | 1 | 6292 |
putrescine transport | 9.5344E-4 | 2 | 3 | 1 | 6292 |
amide transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
polyamine transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
amide transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
urea transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
active transmembrane transporter activity | 3.6682E-4 | 2 | 121 | 2 | 6292 |
putrescine transmembrane transporter activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
ATP:ADP antiporter activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
spermidine transmembrane transporter activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
solute:solute antiporter activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
antiporter activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
polyamine transmembrane transporter activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
secondary active transmembrane transporter activity | 8.248E-3 | 2 | 26 | 1 | 6292 |