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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.799901399762]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Arp2/3 protein complex 1.0611E-6 2 7 2 6292
actin cytoskeleton 1.8038E-4 2 85 2 6292
cytoskeletal part 1.0156E-3 2 201 2 6292
cytoskeleton 1.1732E-3 2 216 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mitochondrion inheritance 2.0514E-5 2 29 2 6292
mitochondrion distribution 2.0514E-5 2 29 2 6292
mitochondrion localization 2.1979E-5 2 30 2 6292
organelle inheritance 4.7798E-5 2 44 2 6292
actin filament organization 1.151E-4 2 68 2 6292
organelle localization 1.8038E-4 2 85 2 6292
actin cytoskeleton organization 3.1973E-4 2 113 2 6292
actin filament-based process 3.4287E-4 2 117 2 6292
mitochondrion organization 6.1087E-4 2 156 2 6292
cytoskeleton organization 1.3422E-3 2 231 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

actin binding 1.0611E-5 2 21 2 6292
ATP binding 1.3945E-5 2 24 2 6292
adenyl ribonucleotide binding 1.5158E-5 2 25 2 6292
adenyl nucleotide binding 2.1979E-5 2 30 2 6292
purine nucleoside binding 2.3495E-5 2 31 2 6292
nucleoside binding 2.5061E-5 2 32 2 6292
ribonucleotide binding 4.1432E-5 2 41 2 6292
purine ribonucleotide binding 4.1432E-5 2 41 2 6292
purine nucleotide binding 6.6999E-5 2 52 2 6292
structural constituent of cytoskeleton 6.9626E-5 2 53 2 6292
nucleotide binding 8.6451E-5 2 59 2 6292
cytoskeletal protein binding 8.6451E-5 2 59 2 6292
structural molecule activity 2.8947E-3 2 339 2 6292
protein binding 9.4468E-3 2 612 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle