| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.461227133389] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| integral to plasma membrane | 2.0514E-5 | 2 | 29 | 2 | 6292 |
| intrinsic to plasma membrane | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| plasma membrane part | 8.0641E-5 | 2 | 57 | 2 | 6292 |
| multivesicular body | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
| intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
| fungal-type vacuole lumen | 2.224E-3 | 2 | 7 | 1 | 6292 |
| vacuolar lumen | 2.859E-3 | 2 | 9 | 1 | 6292 |
| late endosome | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| ER to Golgi transport vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| pattern specification process | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| regionalization | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| proximal/distal pattern formation | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| manganese ion transport | 2.224E-3 | 2 | 7 | 1 | 6292 |
| multicellular organismal development | 2.859E-3 | 2 | 9 | 1 | 6292 |
| multicellular organismal process | 2.859E-3 | 2 | 9 | 1 | 6292 |
| phosphate transport | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| polyamine transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| inorganic anion transport | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| anion transport | 7.9314E-3 | 2 | 25 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| active transmembrane transporter activity | 3.6682E-4 | 2 | 121 | 2 | 6292 |
| inorganic phosphate transmembrane transporter activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
| epsilon hydroxylase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| manganese ion transmembrane transporter activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
| substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
| phosphate transmembrane transporter activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| polyamine transmembrane transporter activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
| inorganic anion transmembrane transporter activity | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| anion transmembrane transporter activity | 6.6645E-3 | 2 | 21 | 1 | 6292 |
| secondary active transmembrane transporter activity | 8.248E-3 | 2 | 26 | 1 | 6292 |
| transition metal ion transmembrane transporter activity | 8.8811E-3 | 2 | 28 | 1 | 6292 |