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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.085] [SVM Score: 0.487606129164]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
THO2
  • nucleus
  • THO complex
    		•
  • mRNA export from nucleus
  • DNA recombination
  • RNA elongation from RNA polymerase II promoter
    		•
  • nucleic acid binding
  • DNA binding
    		•
    YRA1
  • transcription export complex
    		•
  • mRNA export from nucleus
    		•
  • RNA binding
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    THO complex 1.2712E-3 2 4 1 6292
    transcription export complex 1.2712E-3 2 4 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    mRNA transport 1.151E-4 2 68 2 6292
    mRNA export from nucleus 1.151E-4 2 68 2 6292
    RNA export from nucleus 1.5966E-4 2 80 2 6292
    RNA transport 1.6371E-4 2 81 2 6292
    nucleic acid transport 1.6371E-4 2 81 2 6292
    establishment of RNA localization 1.6371E-4 2 81 2 6292
    RNA localization 2.1151E-4 2 92 2 6292
    nucleobase, nucleoside, nucleotide and nucleic acid transport 2.304E-4 2 96 2 6292
    nuclear export 2.6542E-4 2 103 2 6292
    nuclear transport 4.2367E-4 2 130 2 6292
    nucleocytoplasmic transport 4.2367E-4 2 130 2 6292
    macromolecule localization 3.9717E-3 2 397 2 6292
    intracellular transport 7.7118E-3 2 553 2 6292
    establishment of localization in cell 9.0494E-3 2 599 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
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    Created and Maintained by: Michael Riffle