| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.500596553488] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| SED1 |
|
|
|
| YLR194C |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| fungal-type cell wall | 2.7588E-4 | 2 | 105 | 2 | 6292 |
| cell wall | 2.8118E-4 | 2 | 106 | 2 | 6292 |
| external encapsulating structure | 2.8118E-4 | 2 | 106 | 2 | 6292 |
| anchored to plasma membrane | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| anchored to membrane | 1.2712E-3 | 2 | 4 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cellular cell wall organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
| external encapsulating structure organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
| cell wall organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
| cellular cell wall organization or biogenesis | 1.0877E-3 | 2 | 208 | 2 | 6292 |
| cell wall organization or biogenesis | 1.0877E-3 | 2 | 208 | 2 | 6292 |
| fungal-type cell wall organization | 3.4937E-3 | 2 | 11 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| structural constituent of cell wall | 5.3053E-6 | 2 | 15 | 2 | 6292 |
| structural molecule activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |