From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.507081838108] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
ENA5 |
|
|
|
MEP1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
sodium ion transport | 9.5344E-4 | 2 | 3 | 1 | 6292 |
ammonium transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
organic cation transport | 2.5415E-3 | 2 | 8 | 1 | 6292 |
nitrogen utilization | 5.3968E-3 | 2 | 17 | 1 | 6292 |
monovalent inorganic cation transport | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ion transmembrane transporter activity | 5.3483E-4 | 2 | 146 | 2 | 6292 |
substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
ammonium transmembrane transporter activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
organic cation transmembrane transporter activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.4455E-3 | 2 | 14 | 1 | 6292 |
ATPase activity, coupled to transmembrane movement of ions | 9.1975E-3 | 2 | 29 | 1 | 6292 |