From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.59890147783] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
NOP2 |
|
|
|
TGS1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
nucleolus | 1.1194E-3 | 2 | 211 | 2 | 6292 |
nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
snRNA capping | 3.1786E-4 | 2 | 1 | 1 | 6292 |
nucleolus organization | 6.3568E-4 | 2 | 2 | 1 | 6292 |
snRNA processing | 9.5344E-4 | 2 | 3 | 1 | 6292 |
ncRNA processing | 1.1624E-3 | 2 | 215 | 2 | 6292 |
RNA capping | 1.2712E-3 | 2 | 4 | 1 | 6292 |
ncRNA metabolic process | 1.6621E-3 | 2 | 257 | 2 | 6292 |
snRNA metabolic process | 2.859E-3 | 2 | 9 | 1 | 6292 |
ribosome biogenesis | 3.0157E-3 | 2 | 346 | 2 | 6292 |
ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
RNA processing | 3.6384E-3 | 2 | 380 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
RNA methyltransferase activity | 1.6421E-5 | 2 | 26 | 2 | 6292 |
methyltransferase activity | 2.304E-4 | 2 | 96 | 2 | 6292 |
transferase activity, transferring one-carbon groups | 2.4511E-4 | 2 | 99 | 2 | 6292 |