| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.037] [SVM Score: 0.62892850695] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| HRB1 |
|
|
|
| NPL3 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| heterogeneous nuclear ribonucleoprotein complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mRNA transport | 1.151E-4 | 2 | 68 | 2 | 6292 |
| mRNA export from nucleus | 1.151E-4 | 2 | 68 | 2 | 6292 |
| RNA export from nucleus | 1.5966E-4 | 2 | 80 | 2 | 6292 |
| RNA transport | 1.6371E-4 | 2 | 81 | 2 | 6292 |
| nucleic acid transport | 1.6371E-4 | 2 | 81 | 2 | 6292 |
| establishment of RNA localization | 1.6371E-4 | 2 | 81 | 2 | 6292 |
| RNA localization | 2.1151E-4 | 2 | 92 | 2 | 6292 |
| nucleobase, nucleoside, nucleotide and nucleic acid transport | 2.304E-4 | 2 | 96 | 2 | 6292 |
| nuclear export | 2.6542E-4 | 2 | 103 | 2 | 6292 |
| nuclear transport | 4.2367E-4 | 2 | 130 | 2 | 6292 |
| nucleocytoplasmic transport | 4.2367E-4 | 2 | 130 | 2 | 6292 |
| poly(A)+ mRNA export from nucleus | 2.224E-3 | 2 | 7 | 1 | 6292 |
| macromolecule localization | 3.9717E-3 | 2 | 397 | 2 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| poly-purine tract binding | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| poly(A) RNA binding | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| single-stranded RNA binding | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| RNA binding | 3.3934E-3 | 2 | 367 | 2 | 6292 |