| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.639171048613] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| VPS29 |
|
|
|
| VPS5 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| retromer complex | 7.579E-7 | 2 | 6 | 2 | 6292 |
| endosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| retrograde transport, endosome to Golgi | 8.6401E-6 | 2 | 19 | 2 | 6292 |
| endosome transport | 6.6999E-5 | 2 | 52 | 2 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| protein retention in Golgi apparatus | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| protein localization in Golgi apparatus | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| maintenance of protein location in cell | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| maintenance of protein location | 8.248E-3 | 2 | 26 | 1 | 6292 |
| maintenance of location in cell | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| maintenance of location | 8.8811E-3 | 2 | 28 | 1 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein transporter activity | 8.3521E-5 | 2 | 58 | 2 | 6292 |
| substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
| transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
| phosphatidylinositol-3-phosphate binding | 6.0308E-3 | 2 | 19 | 1 | 6292 |