General Information: |
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Name(s) found: |
FBpp0309007
[FlyBase]
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Description(s) found:
SHOW ONLY BEST |
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Organism: | Drosophila melanogaster |
Length: | 1945 amino acids |
Gene Ontology: |
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Cellular Component: |
mRNA cleavage factor complex
[ISS]
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Biological Process: |
mRNA cleavage
[ISS]
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Molecular Function: |
RNA binding
[IDA]
negative transcription elongation factor activity [IDA] |
Sequence: |
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Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51 | | | | | | 1 MEQLFQNYRD DERRIGEEYL SSLQDLNCNS KPLINMLTML AEENINYAHI IVKVVEYYIS 60 61 QVAPEFKLPI LYLIDSIVKN VKSSYVQLFG QCIVNIFLHA FESVQHSQSQ VLEKVRERMY 120 121 ALRQTWNEVF PPSKMYALDV KVKRLDNNWP ITAKQPTNKI HVNPAIHVNP DFLKPGLVPG 180 181 MPGNPTITSD MEEILQAKTR ELLELKKRKL ELELEQTKKH LEEQERQLTQ TTDAMVGAPI 240 241 IMPAPTPAAI CPPITDPGIA VHNQRAPGVM GNVGPVMHNM PVAPQLFANK PKVHPVNPAL 300 301 LNSVRQRDPR LARQMHAASS HPAAPARNDP RLEAKSSSSQ KSSRSRSKSP VRNSSSRSGK 360 361 SGSSSHSSSS SRKRSESKSS TTSSSSSSSD VRHKGVTASS SNQPTVKRSG KITSKDSDRY 420 421 VRNGSPLGSA KRKSSSPSSS PSKSKRSTSH KSSSSRGKTS SLRSRSRSPV FMDVDLRTGV 480 481 RSKSPESRAV APSSLPLAGA SLPASAKAPK DLEKRHPPAP PSPPIIDVSS MDIDLRRPKT 540 541 PPPPTFDSVD SLDQKDTTSG HISSTIIQAS GASNASPSGA STSKLPAKVS FKIQKQFNKL 600 601 EKSTANLSTV SMLNSNPTTS GTPAASLVRQ SSPSPSSSSI SSQGNVSDAL QLSINKLLQV 660 661 QGGAGEKRPA DALPPHIDGE EQPPQQKRSK SAKLDALFGS EDVDLRREIL VVKPGVIVVE 720 721 DDSMDECDVD KPTKKSGSPP KKATLEELRA KLANSARIQN KQGKSDKSRD QAVSQRLKQL 780 781 AELKVNDDSQ EAHDEKVRTI LSQAQEMYEN NGMNQEQYKD LVQKVVAINE NSKIKESRRR 840 841 DNDLERNAAR DAVLRKRIPK LKGNENHSAG SPHTDGSPRY DDQPAAAPEK PSNKRDKTKR 900 901 EMKRRKPTKW GEQVDAGAAQ RTAWQLANVN NNNNNNNNKR GGIQLPVQPQ AGFRGMPWQQ 960 961 PPAMVLGQSA VPPPPQPPSM ISMPPVPPVT MTKAINSLDN PMADVVRSIT IDGGSKEIRF1020 1021 YNQVAIIFMD GDQPHEIGFQ PGQRVIFIDH NEPLPLCFND DYKPFHLDGQ LHRIRFGFPS1080 1081 RELYIDEHWY EIYFGGPAVS VPIGNKLHII KAEGPPPNVD IGRVRRDLVV GKINMIADAH1140 1141 TIVPLFLDAR QQTFQLGAEQ HSLQFVDSFQ YALLDGQLQK MEYGGLPKGM MLNGGRSCFI1200 1201 RFGTLPKGVI AGKTHVADMV YIKTDAPAEP PKPPPIIVKP PPVVEQPKPA PVAVAPISLP1260 1261 AAAAALESLN INDLFQKLVS SGIIGGATAA PTLPAADSSA AKEPTASATE PSTASATVAP1320 1321 ATLPAGPPAE PIKRIDLRKP ESIKTRQAAV VAVLYLGMQC SSCGVRFPPE QTIKYSQHLD1380 1381 WHFRQNRRER DSTRKATSRK WYYDLNDWRQ YEEIEDVEER EKNFLEAQGQ PGGVEALDEL1440 1441 SQQRSLDSPV PTCAAGRDDV DHCCDMCHEK FEQFYNEELE EWHLRSAIRV EDKIYHPLCY1500 1501 EDYKASLNPP TEVKSDQDVD MNNTDDNAMD TLIKVEDDED EGTPNSSQPI FEDDDDDVIV1560 1561 LPNEEPSVTE IVDDDDEDEY VPGNVTRADM GNESQDKTES NSETKEPKKD QVELGEQQQN1620 1621 ESANESDVEI QEPNIPFTDL DTYVEKEMDE ATRAALLNVK IKEEPKDEYE EDEDDGFEDV1680 1681 GTVVSLLPLP EDEISIHSSE TQTHTIGSSA SPATIERPAS VTSLSLPANE ADELEQGDAN1740 1741 TDTDAELNGE KQEATHNLSA VGPALPLASI VNKIKINITK NTSSNSHNSA SNTTTTDSQV1800 1801 SAISVIGGSG AAGGASGAGD PVQQVNAIQT ISTIPVLCGG NTFVPKIATS TPSNVISSIS1860 1861 VIGSTYGASS SSNGSRSTTS TASSAPAASL LAETGSLKSP TPPLATVDPD PEPVVEQKPA1920 1921 LRNATLKRTK KVQNGIETSG LCSIM |
SHOWING SINGLE HITS. [ Hide Single Hits ]
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Domains predicted:
# | Region(s) | Method | Confidence | Match Description | |
1 | View Details | [1..148] | 32.522879 | The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model | |
2 | View Details | [149..357] | N/A | No confident structure predictions are available. | |
3 | View Details | [358..421] | N/A | No confident structure predictions are available. | |
4 | View Details | [422..486] | N/A | No confident structure predictions are available. | |
5 | View Details | [487..685] | N/A | No confident structure predictions are available. | |
6 | View Details | [686..934] | N/A | No confident structure predictions are available. | |
7 | View Details | [935..1030] | N/A | No confident structure predictions are available. | |
8 | View Details | [1031..1217] | N/A | No confident structure predictions are available. | |
9 | View Details | [1218..1393] | 1.016991 | View MSA. No confident structure predictions are available. | |
10 | View Details | [1394..1511] | N/A | No confident structure predictions are available. | |
11 | View Details | [1512..1666] | N/A | No confident structure predictions are available. | |
12 | View Details | [1667..1817] | 2.080996 | View MSA. No confident structure predictions are available. | |
13 | View Details | [1818..1945] | N/A | No confident structure predictions are available. |
Functions predicted (by domain):
# | Gene Ontology predictions | |||||||||||||||||||||
1 |
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2 | No functions predicted. | |||||||||||||||||||||
3 | No functions predicted. | |||||||||||||||||||||
4 | No functions predicted. | |||||||||||||||||||||
5 | No functions predicted. | |||||||||||||||||||||
6 | No functions predicted. | |||||||||||||||||||||
7 | No functions predicted. | |||||||||||||||||||||
8 | No functions predicted. | |||||||||||||||||||||
9 | No functions predicted. | |||||||||||||||||||||
10 | No functions predicted. | |||||||||||||||||||||
11 | No functions predicted. | |||||||||||||||||||||
12 | No functions predicted. | |||||||||||||||||||||
13 | No functions predicted. |
Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
Confidence of classification: | 0.90 |
Source: Reynolds et al. (2008)