General Information: |
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Name(s) found: |
Cpsf160-PA /
FBpp0089163
[FlyBase]
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Description(s) found:
SHOW ONLY BEST |
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Organism: | Drosophila melanogaster |
Length: | 1455 amino acids |
Gene Ontology: |
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Cellular Component: |
mRNA cleavage and polyadenylation specificity factor complex
[ISS][NAS]
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Biological Process: |
mRNA polyadenylation
[ISS][NAS]
mRNA cleavage [ISS][NAS] |
Molecular Function: |
protein binding
[IPI]
mRNA binding [NAS] mRNA 3'-UTR binding [ISS] |
Sequence: |
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Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51 | | | | | | 1 MFSMCKQTHS ATAVEFSIAC RFFNNLDENL VVAGANVLKV YRIAPNVEAS QRQKLNPSEM 60 61 RLAPKMRLEC LATYTLYGNV MSLQCVSLAG AMRDALLISF KDAKLSVLQH DPDTFALKTL 120 121 SLHYFEEDDI RGGWTGRYFV PTVRVDPDSR CAVMLVYGKR LVVLPFRKDN SLDEIELADV 180 181 KPIKKAPTAM VSRTPIMASY LIALRDLDEK IDNVLDIQFL HGYYEPTLLI LYEPVRTCPG 240 241 RIKVRSDTCV LVAISLNIQQ RVHPIIWTVN SLPFDCLQVY PIQKPIGGCL VMTVNAVIYL 300 301 NQSVPPYGVS LNSSADNSTA FPLKPQDGVR ISLDCANFAF IDVDKLVISL RTGDLYVLTL 360 361 CVDSMRTVRN FHFHKAAASV LTSCICVLHS EYIFLGSRLG NSLLLHFTEE DQSTVITLDE 420 421 VEQQSEQQQR NLQDEDQNLE EIFDVDQLEM APTQAKSRRI EDEELEVYGS GAKASVLQLR 480 481 KFIFEVCDSL MNVAPINYMC AGERVEFEED GVTLRPHAES LQDLKIELVA ATGHSKNGAL 540 541 SVFVNCINPQ IITSFELDGC LDVWTVFDDA TKKSSRNDQH DFMLLSQRNS TLVLQTGQEI 600 601 NEIENTGFTV NQPTIFVGNL GQQRFIVQVT TRHVRLLQGT RLIQNVPIDV GSPVVQVSIA 660 661 DPYVCLRVLN GQVITLALRE TRGTPRLAIN KHTISSSPAV VAISAYKDLS GLFTVKGDDI 720 721 NLTGSSNSAF GHSFGGYMKA EPNMKVEDEE DLLYGDAGSA FKMNSMADLA KQSKQKNSDW 780 781 WRRLLVQAKP SYWLVVARQS GTLEIYSMPD MKLVYLVNDV GNGSMVLTDA MEFVPISLTT 840 841 QENSKAGIVQ ACMPQHANSP LPLELSVIGL GLNGERPLLL VRTRVELLIY QVFRYPKGHL 900 901 KIRFRKMDQL NLLDQQPTHI DLDENDEQEE IESYQMQPKY VQKLRPFANV GGLSGVMVCG 960 961 VNPCFVFLTF RGELRIHRLL GNGDVRSFAA FNNVNIPNGF LYFDTTYELK ISVLPSYLSY1020 1021 DSVWPVRKVP LRCTPRQLVY HRENRVYCLI TQTEEPMTKY YRFNGEDKEL SEESRGERFI1080 1081 YPIGSQFEMV LISPETWEIV PDASITFEPW EHVTAFKIVK LSYEGTRSGL KEYLCIGTNF1140 1141 NYSEDITSRG NIHIYDIIEV VPEPGKPMTK FKIKEIFKKE QKGPVSAISD VLGFLVTGLG1200 1201 QKIYIWQLRD GDLIGVAFID TNIYVHQIIT VKSLIFIADV YKSISLLRFQ EEYRTLSLAS1260 1261 RDFNPLEVYG IEFMVDNSNL GFLVTDAERN IIVYMYQPEA RESLGGQKLL RKADYHLGQV1320 1321 VNTMFRVQCH QKGLHQRQPF LYENKHFVVY GTLDGALGYC LPLPEKVYRR FLMLQNVLLS1380 1381 YQEHLCGLNP KEYRTLKSSK KQGINPSRCI IDGDLIWSYR LMANSERNEV AKKIGTRTEE1440 1441 ILGDLLEIER LASVF |
SHOWING SINGLE HITS. [ Hide Single Hits ]
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Domains predicted:
# | Region(s) | Method | Confidence | Match Description | |
1 | View Details | [1..186] | 4.089987 | View MSA. No confident structure predictions are available. | |
2 | View Details | [187..236] | 1.090993 | View MSA. No confident structure predictions are available. | |
3 | View Details | [237..364] | 1.093993 | View MSA. No confident structure predictions are available. | |
4 | View Details | [365..473] | N/A | No confident structure predictions are available. | |
5 | View Details | [474..744] | 44.0 | Crystal Structure of the DDB1 BPB Domain | |
6 | View Details | [745..1455] | 146.0 | Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein |
Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
Confidence of classification: | 0.65 |
Source: Reynolds et al. (2008)