| Protein: | Cpsf160-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1455 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpsf160-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
1372.0 | [0..1] | [1455..1] |
|
Region A: Residues: [1-186] |
1 11 21 31 41 51
| | | | | |
1 MFSMCKQTHS ATAVEFSIAC RFFNNLDENL VVAGANVLKV YRIAPNVEAS QRQKLNPSEM 60
61 RLAPKMRLEC LATYTLYGNV MSLQCVSLAG AMRDALLISF KDAKLSVLQH DPDTFALKTL 120
121 SLHYFEEDDI RGGWTGRYFV PTVRVDPDSR CAVMLVYGKR LVVLPFRKDN SLDEIELADV 180
181 KPIKKA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [187-236] |
1 11 21 31 41 51
| | | | | |
1 PTAMVSRTPI MASYLIALRD LDEKIDNVLD IQFLHGYYEP TLLILYEPVR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [237-364] |
1 11 21 31 41 51
| | | | | |
1 TCPGRIKVRS DTCVLVAISL NIQQRVHPII WTVNSLPFDC LQVYPIQKPI GGCLVMTVNA 60
61 VIYLNQSVPP YGVSLNSSAD NSTAFPLKPQ DGVRISLDCA NFAFIDVDKL VISLRTGDLY 120
121 VLTLCVDS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [365-473] |
1 11 21 31 41 51
| | | | | |
1 MRTVRNFHFH KAAASVLTSC ICVLHSEYIF LGSRLGNSLL LHFTEEDQST VITLDEVEQQ 60
61 SEQQQRNLQD EDQNLEEIFD VDQLEMAPTQ AKSRRIEDEE LEVYGSGAK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [474-744] |
1 11 21 31 41 51
| | | | | |
1 ASVLQLRKFI FEVCDSLMNV APINYMCAGE RVEFEEDGVT LRPHAESLQD LKIELVAATG 60
61 HSKNGALSVF VNCINPQIIT SFELDGCLDV WTVFDDATKK SSRNDQHDFM LLSQRNSTLV 120
121 LQTGQEINEI ENTGFTVNQP TIFVGNLGQQ RFIVQVTTRH VRLLQGTRLI QNVPIDVGSP 180
181 VVQVSIADPY VCLRVLNGQV ITLALRETRG TPRLAINKHT ISSSPAVVAI SAYKDLSGLF 240
241 TVKGDDINLT GSSNSAFGHS FGGYMKAEPN M
|
| Detection Method: | |
| Confidence: | 44.0 |
| Match: | 2b5nA |
| Description: | Crystal Structure of the DDB1 BPB Domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [745-1455] |
1 11 21 31 41 51
| | | | | |
1 KVEDEEDLLY GDAGSAFKMN SMADLAKQSK QKNSDWWRRL LVQAKPSYWL VVARQSGTLE 60
61 IYSMPDMKLV YLVNDVGNGS MVLTDAMEFV PISLTTQENS KAGIVQACMP QHANSPLPLE 120
121 LSVIGLGLNG ERPLLLVRTR VELLIYQVFR YPKGHLKIRF RKMDQLNLLD QQPTHIDLDE 180
181 NDEQEEIESY QMQPKYVQKL RPFANVGGLS GVMVCGVNPC FVFLTFRGEL RIHRLLGNGD 240
241 VRSFAAFNNV NIPNGFLYFD TTYELKISVL PSYLSYDSVW PVRKVPLRCT PRQLVYHREN 300
301 RVYCLITQTE EPMTKYYRFN GEDKELSEES RGERFIYPIG SQFEMVLISP ETWEIVPDAS 360
361 ITFEPWEHVT AFKIVKLSYE GTRSGLKEYL CIGTNFNYSE DITSRGNIHI YDIIEVVPEP 420
421 GKPMTKFKIK EIFKKEQKGP VSAISDVLGF LVTGLGQKIY IWQLRDGDLI GVAFIDTNIY 480
481 VHQIITVKSL IFIADVYKSI SLLRFQEEYR TLSLASRDFN PLEVYGIEFM VDNSNLGFLV 540
541 TDAERNIIVY MYQPEARESL GGQKLLRKAD YHLGQVVNTM FRVQCHQKGL HQRQPFLYEN 600
601 KHFVVYGTLD GALGYCLPLP EKVYRRFLML QNVLLSYQEH LCGLNPKEYR TLKSSKKQGI 660
661 NPSRCIIDGD LIWSYRLMAN SERNEVAKKI GTRTEEILGD LLEIERLASV F
|
| Detection Method: | |
| Confidence: | 146.0 |
| Match: | 2b5lA |
| Description: | Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein |
Matching Structure (courtesy of the PDB): |
|
