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Protein Overview: TADA_ARATH

General Information:
Name(s) found: TADA_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75336834|sp|Q9S7I0.1|Y1872_ARATH RecName: Full=Uncharacterized protein At1g68720 [NCBI NR]
  • gi|5734706|gb|AAD49971.1|AC008075_4 Contains similarity to gi|3329316 cytosine deaminase from Chlamydia trachomatis genome gb|AE001357 and contains a PF|00383 cytidine deaminase zinc-binding region. EST gb|W43306 comes from this gene. [Arabidopsis thalia [NCBI NR]
  • pir||G96711 unknown protein, 92941-88668 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15221490|ref|NP_177039.1| TADA (TRNA ARGININE ADENOSINE DEAMINASE); catalytic/ hydrolase/ zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|12324145|gb|AAG52046.1|AC011914_16 unknown protein; 92941-88668 [Arabidopsis thaliana] [NCBI NR]
  • Uncharacterized protein At1g68720 OS=Arabidopsis thaliana GN=At1g68720 PE=1 SV=1 [Swiss-Prot]
  • tRNA(adenine(34)) deaminase, chloroplastic OS=Arabidopsis thaliana GN=TADA PE=1 SV=1 [Swiss-Prot]
  • (Q9S7I0) Hypothetical protein [athaliana3702.FASTAC.txt]
  • Contains similarity to gi|3329316 cytosine deaminase from Chlamydia trachomatis genome gb|AE001357 and contains a PF|00383 cytidine deaminase zinc-binding region. EST gb|W43306 comes from this gene. [Arabidopsis thaliana]gi|25404767|pir||G96711 unknown [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cytidine/deoxycytidylate deaminase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | cytidine/deoxycytidylate deaminase family protein | chr1:25808210-25812483 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein; 92941-88668 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hydrolase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Contains similarity to gi|3329316 cytosine deaminase from Chlamydia trachomatis genome gb|AE001357 and contains a PF|00383 cytidine deaminase zinc-binding region. EST gb|W43306 comes from this gene. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: TADA, ATTADA | tRNA arginine adenosine deaminase | chr1:25804547-25808820 FORWARD LENGTH=1307 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis thaliana GN=TADA PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1307 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    plasma membrane [IDA]
    Biological Process: tRNA wobble adenosine to inosine editing [IDA][IMP]
    Molecular Function: zinc ion binding [ISS]
    tRNA-specific adenosine deaminase activity [IDA][IMP]
    hydrolase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNTYTNSLQ WPIRSRNQQD YCSLLPERSE SYKLSKAYTS SRCYCVSSRS SCCCCCSTPS  60
   61 SSSFVKPKVL INPGFVLYGV RQSTLIQWPS FQRRLLVGGG RLMGCEVYSS CDGIRRKNRS 120
  121 FKLRCLEESD ECCGGRSCSD DVEAMISFLS EELIDEERKW NLVSRVKEKK KVGNVRKVSV 180
  181 EGSNSYGNGR VSQRVKKPEG FGRRKEIKED VKLNERYDCE HCGRRKKSSE LESESRRGSK 240
  241 LVTGEYIGKS YRGDEEREVR PRRRKSSSCS SYYSLASSGE FESDTEDQEE DVEIYRENVR 300
  301 SSEKKVVDQS AKRLKSRKEA SQMHSRKKRD ESSTGVDSRY QKQIFEEGEN SNQAVTLNQR 360
  361 RRKKFSQTEN RVSESTGNYE EDMEIHEVHV NDAETSSQNQ KLFNEREDYR VHSIRNDSGN 420
  421 ENIESSQHQL KERLETRYSS EDRVSEMRRR TKYSSSQEEG INVLQNFPEV TNNQQPLVEE 480
  481 RISKQAGTRR TTEHISESSE IHDIDIRNTY VSQREDQIRN QEVHAGLVSG LQSERKQQDY 540
  541 HIEHNPLQTT QSDRTSVSVS HTSDAVRYTE IQRKSEKRLI GQGSTTAVQS DSKVEKNGAQ 600
  601 KEDSRLDHAN SKKDGQTTLG LQSYQSKLSE EASSSQSSLM ASRTKLQLVD LVSEEMQGSE 660
  661 TTLIPPSSQL VSRRSGQSYR TGGVSIQEIS HGTSESGYTT AFEHPRAGAS VNSQSAGELM 720
  721 GFTSHEDAMG SAHRLEQASE KYVGEFVKKA KHGVINPETE EQRAESNQLK RRDSRRSSGG 780
  781 SGAKGPSDEM WVTDSAQGTP HPGATEGNAA VGNAIFKRNG RSLWNVIADI ARLRWGSRAG 840
  841 SPDSSAKPAG RSSPNESVSS ATWFSGREHD GSSDDNTKGD KVLPQEAPSL HQVEVGQTSP 900
  901 RSQSEYPGTT KLKQRSERHE GVVSSPSSTI LEGGSVSNRM SSTSGNQIVG VDEEEGGNFE 960
  961 FRLPETALTE VPMKLPSRNL IRSPPIKESS ESSLTEASSD QNFTVGEGRR YPRMDAGQNP1020
 1021 LLFPGRNLRS PAVMEPPVPR PRMVSGSSSL REQVEQQQPL SAKSQEETGS VSADSALIQR1080
 1081 KLQRNKQVVR DSFEEWEEAY KVEAERRTVD EIFMREALVE AKKAADTWEV PVGAVLVHDG1140
 1141 KIIARGYNLV EELRDSTAHA EMICIREGSK ALRSWRLADT TLYVTLEPCP MCAGAILQAR1200
 1201 VNTLVWGAPN KLLGADGSWI RLFPGGEGNG SEASEKPPPP VHPFHPKMTI RRGVLESECA1260
 1261 QTMQQFFQLR RKKKDKNSDP PTPTDHHHHH LPKLLNKMHQ VLPFFCL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] deduced N/A No confident structure predictions are available.
    2 View Details [88..404] PSI-BLAST 25.522879 Heavy meromyosin subfragment
    3 View Details [405..553] PSI-BLAST 6.0 No description for 2iw5A was found.
    4 View Details [554..797] PSI-BLAST 10.09691 No description for 2dfsA was found.
    5 View Details [798..866] deduced N/A No confident structure predictions are available.
    6 View Details [867..1105] deduced N/A No confident structure predictions are available.
    7 View Details [1106..1307] PSI-BLAST 65.522879 Crystal structure of tRNA adenosine deaminase TadA from Escherichia coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  2.47101232597734 bayes_pls_golite062009
  • DNA binding
    		•  1.99585201775848 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.79618612866073 bayes_pls_golite062009
  • transcription factor activity
    		•  1.69295668337614 bayes_pls_golite062009
  • binding
    		•  1.095333525217 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7
    Term Confidence Notes
  • catalytic activity
    		•  2.07800438828306 bayes_pls_golite062009
  • methyltransferase activity
    		•  1.73753215913649 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  1.66914541186463 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
    		•  0.516651342237498 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  0.385948807040181 bayes_pls_golite062009
  • hydrolase activity
    		•  0.34203636465094 bayes_pls_golite062009
  • transferase activity
    		•  0.268221683084535 bayes_pls_golite062009
  • deaminase activity
    		•  0.100786900220128 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle