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Protein Overview: gi|39545896, gi|...

General Information:
Name(s) found: gi|9369371 [NCBI NR]
gi|39545896 [NCBI NR]
gi|15222264 [NCBI NR]
gi|12642908 [NCBI NR]
gi|11935195 [NCBI NR]
gi|11692842 [NCBI NR]
gi|110741044 [NCBI NR]
Description(s) found:
Found 19 descriptions.
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  • gi|9369371|gb|AAF87120.1|AC006434_16 F10A5.27 [Arabidopsis thaliana] [NCBI NR]
  • gi|39545896|gb|AAR28011.1| TFIIF-beta 2 [Arabidopsis thaliana] [NCBI NR]
  • gi|15222264|ref|NP_177683.1| transcription initiation factor IIF beta subunit (TFIIF-beta) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12642908|gb|AAK00396.1|AF339714_1 putative transcription initiation factor [Arabidopsis thaliana] [NCBI NR]
  • gi|11935195|gb|AAG42013.1|AF327423_1 putative transcription initiation factor [Arabidopsis thaliana] [NCBI NR]
  • gi|11692842|gb|AAG40024.1|AF324673_1 At1g75700 [Arabidopsis thaliana] [NCBI NR]
  • gi|110741044|dbj|BAE98616.1| putative transcription initiation factor [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 261 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    transcription factor TFIIF complex [ISS]
    Biological Process: transcription from RNA polymerase II promoter [IEA]
    transcription initiation from RNA polymerase II promoter [IEA][ISS]
    Molecular Function: ATP binding [IEA]
    RNA polymerase II transcription factor activity [IEA][ISS]
    catalytic activity [IEA]
    general RNA polymerase II transcription factor activity [IEA]
    ATP-dependent helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDIHNLDIE KSDRSIWLMK CPVVVDKAWH KIAASSSSSF ASSDSPPDMA KIVREVDPLR  60
   61 DDSPPEFKMY MVGAEYGNMP KCYALNMFTD FVPMGGFSDV NQGCAAAEGK VDHKFDMKPY 120
  121 GETIEEYARL CRERTSKAMV KNRQIQVIDN DRGVHMRPMP GMLGLVSSNS KEKRKPPPVK 180
  181 QTEVKRTRRD RGELEAIMFK LFEGQPNWTL KQLVQETDQP AQFLKEILNE LCVYNKRGSN 240
  241 QGTYELKPEY KKSAEDDTGG Q

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] PSI-BLAST 26.30103 TFIIF beta subunit, Rap30
    2 View Details [123..261] PSI-BLAST 28.0 DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  10.2797850053222 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  6.22439849848084 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  4.06672086326535 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.89911747857156 bayes_pls_golite062009
  • binding
    		•  2.6963272883422 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.30173573105398 bayes_pls_golite062009
  • protein binding
    		•  1.06175937412568 bayes_pls_golite062009
  • transcription activator activity
    		•  0.800371882273381 bayes_pls_golite062009
  • transcription factor binding
    		•  0.677361513203971 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.43974291826617 bayes_pls_golite062009
  • catalytic activity
    		•  0.304516551414824 bayes_pls_golite062009
    2
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  5.67074370996647 bayes_pls_golite062009
  • transcription regulator activity
    		•  5.55329976718261 bayes_pls_golite062009
  • DNA binding
    		•  4.84466441605416 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.57954522145536 bayes_pls_golite062009
  • transcription factor activity
    		•  4.12685284895733 bayes_pls_golite062009
  • binding
    		•  4.05190810999633 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.60738445921725 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.3918869755162 bayes_pls_golite062009
  • transcription activator activity
    		•  2.37668609508629 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.22485867684613 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  1.82365519759474 bayes_pls_golite062009
  • RNA polymerase activity
    		•  1.82365519759474 bayes_pls_golite062009
  • transcription elongation regulator activity
    		•  1.81270943531115 bayes_pls_golite062009
  • RNA binding
    		•  0.992043085614693 bayes_pls_golite062009
  • protein binding
    		•  0.961087148890615 bayes_pls_golite062009
  • transcription factor binding
    		•  0.85714789329232 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.66743181561551 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.237727660028553 bayes_pls_golite062009
  • positive transcription elongation factor activity
    		•  0.13524243942225 bayes_pls_golite062009
  • structural molecule activity
    		•  0.111941063082739 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity, enhancer binding
    		•  0.0360186926687502 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle