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Protein Overview: PABP6_ARATH

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..88] PSI-BLAST 48.69897 Poly(A)-binding protein
2 View Details [89..211] PSI-BLAST 9.045757 NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1)
3 View Details [212..297] FFAS03 3.69 NMR Structure of the N-terminal RRM domain of Cleavage stimulation factor 64 KDa subunit
4 View Details [298..381] PSI-BLAST 22.154902 No description for 2d9pA was found.
5 View Details [382..537] PSI-BLAST 3.30103 Sec24

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • RNA binding
  • 5.15097136329571 bayes_pls_golite062009
  • nucleic acid binding
  • 4.92126426323641 bayes_pls_golite062009
  • mRNA binding
  • 4.05281507540116 bayes_pls_golite062009
  • binding
  • 3.64400841800969 bayes_pls_golite062009
  • 2.60920363363072 bayes_pls_golite062009
  • protein binding
  • 2.17260848225967 bayes_pls_golite062009
  • transcription regulator activity
  • 1.92450390013691 bayes_pls_golite062009
  • DNA binding
  • 1.8021593476478 bayes_pls_golite062009
  • single-stranded RNA binding
  • 1.46469774223879 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 1.36691748240059 bayes_pls_golite062009
  • transcription factor activity
  • 1.15127506309683 bayes_pls_golite062009
  • transcription repressor activity
  • 0.998305828880243 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.824614388276642 bayes_pls_golite062009
  • mRNA 5'-UTR binding
  • 0.625848256054783 bayes_pls_golite062009
  • translation repressor activity, nucleic acid binding
  • 0.461000905454505 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.383589644462932 bayes_pls_golite062009
  • translation regulator activity
  • 0.38120065819101 bayes_pls_golite062009
  • structural molecule activity
  • 0.166336846372115 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.128616879457381 bayes_pls_golite062009
    3
    Term Confidence Notes
  • RNA binding
  • 4.74219150342477 bayes_pls_golite062009
  • nucleic acid binding
  • 4.65259034341669 bayes_pls_golite062009
  • mRNA binding
  • 3.63162433534903 bayes_pls_golite062009
  • binding
  • 3.48033873254013 bayes_pls_golite062009
  • 2.38034004712143 bayes_pls_golite062009
  • protein binding
  • 2.10850948869511 bayes_pls_golite062009
  • transcription regulator activity
  • 1.94691250607537 bayes_pls_golite062009
  • DNA binding
  • 1.80828042019548 bayes_pls_golite062009
  • transcription factor activity
  • 1.17242427495624 bayes_pls_golite062009
  • single-stranded RNA binding
  • 1.08300488237934 bayes_pls_golite062009
  • transcription repressor activity
  • 1.00459347347517 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 0.960399311787502 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.462558743683805 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.327072171076297 bayes_pls_golite062009
  • mRNA 5'-UTR binding
  • 0.271234585816403 bayes_pls_golite062009
  • translation regulator activity
  • 0.246220338604608 bayes_pls_golite062009
  • structural molecule activity
  • 0.175217083426707 bayes_pls_golite062009
  • translation repressor activity, nucleic acid binding
  • 0.147208072406136 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.0127733116412899 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle