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Protein Overview: PRT1_ARATH

General Information:
Name(s) found: PRT1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|62900696|sp|Q8LBL5.2|PRT1_ARATH RecName: Full=E3 ubiquitin-protein ligase PRT1; AltName: Full=Proteolysis 1 protein [NCBI NR]
  • gi|3319886|emb|CAA11892.1| PRT1 [Arabidopsis thaliana] [NCBI NR]
  • gi|3319884|emb|CAA11891.1| PRT1 [Arabidopsis thaliana] [NCBI NR]
  • pir||T52193 RING finger protein PRT1 [validated] - Arabidopsis thaliana [NCBI NR]
  • gi|21280981|gb|AAM45125.1| putative PRT1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|19424005|gb|AAL87280.1| putative PRT1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15230192|ref|NP_189124.1| PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase [Arabidopsis thaliana] [NCBI NR]
  • gi|11994662|dbj|BAB02890.1| PRT1 protein [Arabidopsis thaliana] [NCBI NR]
  • E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1 PE=2 SV=2 [Swiss-Prot]
  • (O82767) Putative PRT1 protein [athaliana3702.FASTAC.txt]
  • putative PRT1 protein [Arabidopsis thaliana]gi|19424005|gb|AAL87280.1| putative PRT1 protein [Arabidopsis thaliana]gi|11994662|dbj|BAB02890.1| PRT1 protein [Arabidopsis thaliana]gi|3319886|emb|CAA11892.1| PRT1 [Arabidopsis thaliana]gi|3319884|emb|CAA1 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ubiquitin protein ligase PRT1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase | chr3:9055660-9057802 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • PRT1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative PRT1 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • PRT1 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Ubiquitin protein ligase PRT1 (Proteolysis 1 protein) [nr-271106-contam.fasta]
  • | Symbols: PRT1 | proteolysis 1 | chr3:9055653-9057795 FORWARD LENGTH=410 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 410 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [TAS]
    Biological Process: ubiquitin-dependent protein catabolic process [TAS]
    Molecular Function: ubiquitin-protein ligase activity [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETMKDITM KNDESQEEEI PDQFLCCVCL ELLYKPIVLS CGHLSCFWCV HKSMNGFRES  60
   61 HCPICRDPYV HFPSVCQKLY FLLKKMYPLA HKKREEQVLK EEQERECFSP QIDLVLDLSV 120
  121 CSGDSLNVSD KQKVEECSNA ANLLSSSSSR GDIPCIPKNQ EPTDAKALNV HENELLKDNK 180
  181 VSKQISKDDL LCSACKELLV RPVVLNCGHV YCEGCVVDMA EESEKIKCQE CNVCDPRGFP 240
  241 KVCLILEQLL EENFPEEYNS RSSKVQKTLA HNSKGNIQSY LKEGPSLSND NNNDDPWLAN 300
  301 PGSNVHFGAG CDSCGVYPII GDRYRCKDCK EEIGYDLCKD CYETPSKVPG RFNQQHTPDH 360
  361 RLELARSPQV LINFNSIGIL LGPVISNEGM DTDEGEEGPP GSSNESSSTE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..156] PSI-BLAST 6.045757 No description for 2cklB was found.
    2 View Details [157..289] PSI-BLAST 8.69897 RAG1 DIMERIZATION DOMAIN
    3 View Details [290..410] FFAS03 3.12 No description for 2dipA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.0159092335062434 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle