Protein Overview: SYP21_ARATH

General Information:
Name(s) found:	SYP21_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|9755735\|emb\|CAC01847.1\| syntaxin homologue [Arabidopsis thaliana] [NCBI NR] gi\|90962974\|gb\|ABE02411.1\| At5g16830 [Arabidopsis thaliana] [NCBI NR] gi\|899122\|gb\|AAA87296.1\| syntaxin of plants 21 [Arabidopsis thaliana] [NCBI NR] gi\|2501101\|sp\|Q39233.1\|SYP21_ARATH RecName: Full=Syntaxin-21; Short=AtSYP21; AltName: Full=PEP12 homolog; Short=AtPEP12; AltName: Full=aPEP12 [NCBI NR] gi\|15724189\|gb\|AAL06486.1\|AF411797_1 AT5g16830/F5E19_170 [Arabidopsis thaliana] [NCBI NR] gi\|15237418\|ref\|NP_197185.1\| SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor [Arabidopsis thaliana] [NCBI NR] pir\|\|T51515 syntaxin homolog F5E19_170 [similarity] - Arabidopsis thaliana [NCBI NR] Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1 [Swiss-Prot] (Q39233) Syntaxin 21 (AtSYP21) (PEP12 homolog) (AtPEP12) (aPEP12) [Swiss-Prot] syntaxin homologue [Arabidopsis thaliana]gi\|15724189\|gb\|AAL06486.1\| AT5g16830/F5E19_170 [Arabidopsis thaliana]gi\|899122\|gb\|AAA87296.1\| syntaxin of plants 21 [Arabidopsis thaliana]gi\|2501101\|sp\|Q39233\|SY21_ARATH Syntaxin 21 (AtSYP21) (PEP12 homolog) (At [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Syntaxin 21 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: PEP12P, SYP21, ATSYP21, PEP12, ATPEP12 \| SYP21 (syntaxin 21); SNAP receptor \| chr5:5533079-5535155 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] AT5g16830/F5E19_170 [Arabidopsis thaliana] [nr-271106-contam.fasta] SYP21; t-SNARE [Arabidopsis thaliana] [nr-271106-contam.fasta] syntaxin homologue [Arabidopsis thaliana] [nr-271106-contam.fasta] Syntaxin-21 (AtSYP21) (PEP12 homolog) (AtPEP12) (aPEP12) [nr-271106-contam.fasta] At5g16830 [Arabidopsis thaliana] [nr-271106-contam.fasta] syntaxin of plants 21 [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: SYP21, ATSYP21, PEP12, ATPEP12, PEP12P \| syntaxin of plants 21 \| chr5:5533076-5535152 REVERSE LENGTH=279 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
Organism:	Arabidopsis thaliana
Length:	279 amino acids
Gene Ontology:
Cellular Component:	trans-Golgi network transport vesicle [IDA][TAS] membrane [IDA] late endosome [IDA][TAS]
Biological Process:	cellular membrane fusion [TAS] late endosome to vacuole transport [IMP] intracellular protein transport [TAS] protein targeting to vacuole [IDA] Golgi to vacuole transport [TAS]
Molecular Function:	SNAP receptor activity [IDA][IMP][TAS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQDLEAGT RSPAPNRFTG GRQQRPSSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTP  60
   61 KDTLELRDKL QKTRLQISEL VKNTSAKLKE ASEADLHGSA SQIKKIADAK LAKDFQSVLK 120
  121 EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN 180
  181 EITFNEAIIE EREQGIREIE DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ 240
  241 ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
phosphatidic acid binding	5.99692791841048	bayes_pls_golite062009
SNAP receptor activity	3.50393203740159	bayes_pls_golite062009
calcium channel inhibitor activity	2.5370773879611	bayes_pls_golite062009
binding	2.13344290488739	bayes_pls_golite062009
myosin head/neck binding	1.76421579737303	bayes_pls_golite062009
transporter activity	1.74189664015129	bayes_pls_golite062009
protein binding	1.51700626946713	bayes_pls_golite062009
substrate-specific transporter activity	1.49085442233849	bayes_pls_golite062009
transmembrane transporter activity	1.13101548288086	bayes_pls_golite062009
protein transporter activity	1.0920578675702	bayes_pls_golite062009
extracellular ligand-gated ion channel activity	0.86350507004267	bayes_pls_golite062009
excitatory extracellular ligand-gated ion channel activity	0.86350507004267	bayes_pls_golite062009
SNARE binding	0.71459772253941	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.643064875848901	bayes_pls_golite062009
gated channel activity	0.621670335227137	bayes_pls_golite062009
ligand-gated channel activity	0.41937155561589	bayes_pls_golite062009
ligand-gated ion channel activity	0.41937155561589	bayes_pls_golite062009
ion transmembrane transporter activity	0.370484918396857	bayes_pls_golite062009
arachidonic acid binding	0.187597126289389	bayes_pls_golite062009
passive transmembrane transporter activity	0.0647076360772156	bayes_pls_golite062009
channel activity	0.0647076360772156	bayes_pls_golite062009
substrate-specific channel activity	0.0435980899803177	bayes_pls_golite062009
phospholipid binding	0.0172309833091902	bayes_pls_golite062009

Source: Reynolds et al. 2008. Manuscript submitted

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..279]	PSI-BLAST	26.0	Syntaxin 1A N-terminal domain

Protein Overview: SYP21_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: