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Protein Overview: YWLC_BACSU

General Information:
Name(s) found: YWLC_BACSU [Swiss-Prot]
Description(s) found:
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  • gi|732384|sp|P39153.1|YWLC_BACSU RecName: Full=Uncharacterized protein ywlC [NCBI NR]
  • gi|556881|emb|CAA86105.1| Similar to Saccharomyces cerevisiae SUA5 protein [Bacillus subtilis] [NCBI NR]
  • pir||I40476 conserved hypothetical protein ywlC - Bacillus subtilis [NCBI NR]
  • gi|1095419|prf||2108403D ipc-29d gene [NCBI NR]
  • Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC OS=Bacillus subtilis GN=ywlC PE=3 SV=1 [Swiss-Prot]
  • 346 aa - unknown; similar to unknown proteins [subtilist_Price.fasta]
  • hypothetical protein BSU36950 [Bacillus subtilis subsp. subtilis str. 168]gi|556881|emb|CAA86105.1| Similar to Saccharomyces cerevisiae SUA5 protein [Bacillus subtilis]gi|2636220|emb|CAB15712.1| ywlC [Bacillus subtilis subsp. subtilis str. 168]gi|21272 [nrdb_11152004_Chlamydomonas]
  • ipc-29d gene [nr-271106-contam.fasta]
  • Hypothetical protein ywlC [nr-271106-contam.fasta]
    • Organism: Bacillus subtilis
    Length: 346 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKRWFVDV TDELSTNDPQ IAQAAALLRE NEVVAFPTET VYGLGANAKN TDAVKKIYEA  60
   61 KGRPSDNPLI VHIADISQLE DLTGPAPEKA KTLMKRFWPG ALTLILPCKP DALSPRVTAG 120
  121 LETVAIRMPD HPLALALIRE SGLPIAAPSA NLSGKPSPTK AEHVAHDLDG RIAGIVDGGP 180
  181 TGIGVESTVL SCADDIPVLL RPGGITKEQI EAVIGPIHVD KGLSDQNEKP ISPGMKYTHY 240
  241 APTAPLAICE GSPERIQHLI QEYQQGGRRV GVLTTEEKAG VYSADYVKSC GRRAQLETVA 300
  301 AGLYDALRSF DENKVDFIIA ESFPDTGVGL AIMNRLMKAA GGRVIR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..214] PSI-BLAST 60.30103 Hypothetical protein YciO
    2 View Details [215..346] PSI-BLAST 20.69897 No description for 2yv4A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • telomeric DNA binding
    		•  2.58217232196133 bayes_pls_golite062009
  • single-stranded telomeric DNA binding
    		•  1.94245361512193 bayes_pls_golite062009
  • binding
    		•  1.44524229223398 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.15094304608167 bayes_pls_golite062009
  • DNA binding
    		•  0.99027678526068 bayes_pls_golite062009
  • RNA binding
    		•  0.63108051002538 bayes_pls_golite062009
  • catalytic activity
    		•  0.343636936190038 bayes_pls_golite062009
  • protein binding
    		•  0.207821310455625 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.0989469098854212 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle