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View Structure Prediction Details

Protein: YWLC_BACSU
Organism: Bacillus subtilis
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YWLC_BACSU.

Description E-value Query
Range
Subject
Range
gi|89095606, gi|... - gi|89095606|ref|ZP_01168500.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911], gi|89...
396.0 [0..1] [346..1]

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Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKRWFVDV TDELSTNDPQ IAQAAALLRE NEVVAFPTET VYGLGANAKN TDAVKKIYEA  60
   61 KGRPSDNPLI VHIADISQLE DLTGPAPEKA KTLMKRFWPG ALTLILPCKP DALSPRVTAG 120
  121 LETVAIRMPD HPLALALIRE SGLPIAAPSA NLSGKPSPTK AEHVAHDLDG RIAGIVDGGP 180
  181 TGIGVESTVL SCADDIPVLL RPGGITKEQI EAVI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.30103
Match: 1k7jA
Description: Hypothetical protein YciO
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
telomeric DNA binding 2.58217232196133 bayes_pls_golite062009
single-stranded telomeric DNA binding 1.94245361512193 bayes_pls_golite062009
binding 1.44524229223398 bayes_pls_golite062009
nucleic acid binding 1.15094304608167 bayes_pls_golite062009
DNA binding 0.99027678526068 bayes_pls_golite062009
RNA binding 0.63108051002538 bayes_pls_golite062009
catalytic activity 0.343636936190038 bayes_pls_golite062009
protein binding 0.207821310455625 bayes_pls_golite062009
structure-specific DNA binding 0.0989469098854212 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [215-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPIHVDKGLS DQNEKPISPG MKYTHYAPTA PLAICEGSPE RIQHLIQEYQ QGGRRVGVLT  60
   61 TEEKAGVYSA DYVKSCGRRA QLETVAAGLY DALRSFDENK VDFIIAESFP DTGVGLAIMN 120
  121 RLMKAAGGRV IR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.69897
Match: 2yv4A
Description: No description for 2yv4A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle