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Protein Overview: cdt-1

General Information:
Name(s) found: cdt-1 / CE22447 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00000413 locus:cdt-1 status:Partially_confirmed UniProt:Q86S68 protein_id:CCD72833.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 684 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    gastrulation with mouth forming first [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRVTRSRS QTPQTAVTDF FKTTRKPRAR GEKKIIDESI TKTTTIKEVQ IPAAPIVENK  60
   61 SSRTRARTPS RQAELSSSGT PPKKAREAEA EAPELPKIHE DIILENPAPQ KSAIDKLMEA 120
  121 SGPAKKKAGI RTVADLQARI AAKGAAKAIH EQNLKNKTKQ VDDHVELLKS PKKPVIVEHH 180
  181 KSPQKSKAAR NLFSPKKPVP DYIIPGFNVL KSAEKVRGEQ DDAHEEEGKR MTAEFLKSSR 240
  241 LIDEVKESAR QRIELPTAYE HLADTFKRID QITAIFIGQN RSCVVPELIK NVKNTSGKDF 300
  301 SNEHLSQILH VYPQSYHIEM REQRKAFGQG GKYELEVRPN LVEDLRGYIY EKSPTDGDTE 360
  361 DLPLVCPSKL LSPKKSPRKQ VQPALRKPEV DGRIRLDAAR QRDRAHVFRY KLASIVTKCH 420
  421 TEFLESQGLC ASSNIKRMHP LFRLDKHCPS LPQVKLPEPP LQKSSIHIGM KEALDKYMDQ 480
  481 VSLPSFVQKA YQDLKSPLKS TTGASGTVPI SPKKFSEMQK EQKSQGAMSL LERIRAKEAI 540
  541 KKAAEACIDK DLERRKQRLT LLRDRYVRIV CNHYTAKRAQ TMEIDVICKF VQFSSSNSSS 600
  601 IPDIMDHLRL LCEVAPMYIS EASLMNKKYF RFTDNNIEAI NELLDEELQI TQKKIDEQRN 660
  661 TQIAQMSHHH TPRPSKAARS LKFH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] MSA 1.200994 View MSA. No confident structure predictions are available.
    2 View Details [184..525] PSI-BLAST 10.69897 Strucure of Geminin-Cdt1 complex
    3 View Details [526..684] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle