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Protein Overview: lec-1

General Information:
Name(s) found: lec-1 / CE16576 [WormBase]
Description(s) found:
Found 27 descriptions.
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  • WBGene00002264 locus:lec-1 32 kDa beta-galactoside-binding lectin status:Partially_confirmed UniProt:P36573 protein_id:CAB04959.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 279 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: sugar binding [IEALink to PubMed article]
    galactoside binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEEPKSYP VPYRSVLQEK FEPGQTLIVK GSTIDESQRF TINLHSKTAD FSGNDVPLHV  60
   61 SVRFDEGKIV LNSFSNGEWG KEERKSNPIK KGDSFDIRIR AHDDRFQIIV DHKEFKDYEH 120
  121 RLPLSSISHL SIDGDLYLNH VHWGGKYYPV PYESGLANGL PVGKSLLVFG TVEKKAKRFH 180
  181 VNLLRKNGDI SFHFNPRFDE KHVIRNSLAA NEWGNEEREG KNPFEKGVGF DLVIQNEEYA 240
  241 FQVFVNGERY ISFAHRADPH DIAGLQISGD IELSGIQIQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..155] PSI-BLAST 41.154902 No description for 2dycA was found.
    2 View Details [156..279] PSI-BLAST 38.522879 X-RAY CRYSTAL STRUCTURE OF C2S HUMAN GALECTIN-1 COMPLEXED WITH GALACTOSE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • sugar binding
    		•  3.34064405064299 bayes_pls_golite062009
  • binding
    		•  2.40096962515027 bayes_pls_golite062009
  • monosaccharide binding
    		•  2.09529521879228 bayes_pls_golite062009
  • carbohydrate binding
    		•  1.90829797790335 bayes_pls_golite062009
  • extracellular matrix structural constituent
    		•  1.81440764049964 bayes_pls_golite062009
  • protein binding
    		•  1.80794638640093 bayes_pls_golite062009
  • extracellular matrix binding
    		•  1.41229380365824 bayes_pls_golite062009
  • glycosaminoglycan binding
    		•  1.25720635817943 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.24423621131253 bayes_pls_golite062009
  • signal transducer activity
    		•  1.24423621131253 bayes_pls_golite062009
  • polysaccharide binding
    		•  1.09475063562581 bayes_pls_golite062009
  • pattern binding
    		•  0.969915174528009 bayes_pls_golite062009
  • receptor binding
    		•  0.9012250808046 bayes_pls_golite062009
  • heparin binding
    		•  0.526582971950561 bayes_pls_golite062009
  • receptor activity
    		•  0.376562682962271 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.372701974560119 bayes_pls_golite062009
  • laminin binding
    		•  0.31629065463492 bayes_pls_golite062009
  • fibronectin binding
    		•  0.296652398618881 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.216086300988177 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.213382263378401 bayes_pls_golite062009
  • DNA binding
    		•  0.157628282318248 bayes_pls_golite062009
  • growth factor activity
    		•  0.119475011376319 bayes_pls_golite062009
  • lactose binding
    		•  0.0476297330938394 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle