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Protein Overview: SPBC18H10.07

General Information:
Name(s) found: SPBC18H10.07 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • WW domain-binding protein 4 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 224 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    ribonucleoprotein complex [RCALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: meiotic chromosome segregation [IMPLink to PubMed article]
    RNA processing [RCALink to PubMed article]
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADYWKSIPK YYCKYCQIFV KDTPFARRSH EQTYKHQDAI KKVMDDIHRS NLLRQELEKN  60
   61 LSIPKSATAT TASAVSSELA SYEKPKKEHP KLRPSKKKAT LDDWDIPTSS TETDTISTTH 120
  121 TSYIPTLLAK QEENEETKET TTNKNESLPG TSLKRNREII EKEERSSFHF RVKPKNLDKV 180
  181 PKLAENEGNK SLESKESNEN KVVFKKKKSG KLRTKSSLKE YDQS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] PSI-BLAST 16.39794 The structure of the zinc finger from the human spliceosomal protein U1C
    2 View Details [106..224] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.09159122181766 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.00943575401579 bayes_pls_golite062009
  • DNA binding
    		•  1.88302925023035 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.6938382526306 bayes_pls_golite062009
  • protein binding
    		•  1.34286017548503 bayes_pls_golite062009
  • transcription factor activity
    		•  0.811204561084531 bayes_pls_golite062009
  • chromatin binding
    		•  0.62560824382952 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.204179698114475 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.142240538056721 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.14032102345781 bayes_pls_golite062009
  • transcription activator activity
    		•  0.0726827112882662 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle