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Protein Overview: SPBC30B4.02c

General Information:
Name(s) found: SPBC30B4.02c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • R3H and G-patch domain, unknown biological role [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 695 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    preribosome, small subunit precursor [ISS]
    Biological Process: maturation of SSU-rRNA [ISS]
    nuclear mRNA splicing, via spliceosome [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFDDLQIL DQLQTSARFR GDTRIRRFKG SNNSKSPFGL NPSSRISQWP RITFIRAKDN  60
   61 YNPAEELCQL IDEQNAHNEA KHQSKEIMLP KETNVKSCED LSKTGEIKAL DIVLFKAITS 120
  121 KGDTLKVKKI PEYAEAFDTT KNVEVSSFPE KSMNENVLIQ HSLNLAPSDK EISSTEESEQ 180
  181 LCYKEQESEK ELYSKDNDDS LDILNVPNLV NDDIANNNAA PPPPLAQAQE QLSTENEDEF 240
  241 DIDDTTDKMT TFTMNKFADL SVLEEDDDDE DEDEELEGEK EEEEEEKEKP EISNYDETEG 300
  301 KVNFSLEDSE SLEFDEGSDD YDYAKLTTEL VGNTDSLAED EDDILEEDED EDEEELLAIF 360
  361 DASDDSEIEA YLSIGDTLQN DFTIYDYDSE DEEYNNPSTQ KTEKVSQSKK GAKVKEEKGL 420
  421 KKDRKLPKKM RKAQKKLERK AGKAVAARMG DAFSNSLDDE SMNLYAELQE QWLKDKSKKA 480
  481 RRRAEREKLR SEGLLGKKSK KKLLRESQKP SSSDSDNASL TRIDKIFIND VYQRMQQFKH 540
  541 SAIEEISLPP CRKYVRRLVH ALANDLNLKS RSYGSGNKRY TMLSKTHKFD ASSVDLVSLT 600
  601 RIMERLQTRV EYQSFSKSGR KSRMTVSSVR SSKATRVYDG QIVGEDAPEI SKENPGRRLL 660
  661 EKLGWYAGKG LGHPENEGSK DSLRAIVKVS RSGLG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..455] PSI-BLAST 29.69897 Heavy meromyosin subfragment
    2 View Details [456..537] deduced N/A No confident structure predictions are available.
    3 View Details [538..588] FFAS03 2.5 SmuBP-2
    4 View Details [589..695] MSA 1.054993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.859940889466509 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.598402461163598 bayes_pls_golite062009
  • DNA binding
    		•  0.545141938793193 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.360465698090476 bayes_pls_golite062009
  • catalytic activity
    		•  0.307971467423079 bayes_pls_golite062009
  • protein binding
    		•  0.0446628977860376 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle