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Protein Overview: seh1

General Information:
Name(s) found: seh1 / SPAC15F9.02 [Sanger Pombe]
Description(s) found:
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  • pir||T37727 probable nuclear pore protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|19114663|ref|NP_593751.1| nucleoporin Seh1 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|1351716|sp|Q10099.1|SEH1_SCHPO RecName: Full=Nucleoporin seh1; AltName: Full=Nuclear pore protein seh1 [NCBI NR]
  • gi|1122363|emb|CAA92379.1| nucleoporin Seh1 [Schizosaccharomyces pombe] [NCBI NR]
  • nucleoporin Seh1 [Sanger Pombe]
  • Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=seh1 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE NUCLEAR PORE PROTEIN: Q10099; [pompepVF.fasta]
  • Nuclear pore protein SEH1 homolog [pompep4896]
  • |||WD repeat protein [pompepnew.fasta]
  • |seh1||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative nuclear pore protein [Schizosaccharomyces pombe]gi|1122363|emb|CAA92379.1| SPAC15F9.02 [Schizosaccharomyces pombe]gi|1351716|sp|Q10099|SEH1_SCHPO Nuclear pore protein SEH1 homologgi|7492764|pir||T37727 probable nuclear pore protein - fission y [nrdb_11152004_Chlamydomonas]
  • |seh1||nucleoporin |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q10099) Nuclear pore protein SEH1 homolog [pompep4896_normal_reversed]
  • |seh1||nucleoporin Seh1|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC15F9.02 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC15F9.02 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Nucleoporin seh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=seh1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 339 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear membrane [IDALink to PubMed article]
    Nup107-160 complex [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nuclear pore [IDALink to PubMed article][TASLink to PubMed article]
    Biological Process: nucleocytoplasmic transport [TASLink to PubMed article]
    rRNA export from nucleus [ISS]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDISATTIQ TNHQDLVNDV TYDFYGRRMV SCSADQRVKV YDFNDDTETW AITSEWRAGD  60
   61 ASLMRVAWAH PSFGQVLAVC SLDRGVRIYE EQKKNFESKT WVEVAKLMDA RSAVLDISFC 120
  121 PFQHGCKLAA VSADATLRIY EAMEPGNLTY WTLMNEIALM PSPPSRNEQP AFCVNWCPSR 180
  181 WREQYIAVGC MNDAYIYKQN SHGKWKKVAE LPGHTDLIRD ICWAPSMGSS YYLIATACKD 240
  241 GNVRIFKVET LCEEVFQEEE DAGNSMTEDS NFNLNSLKVE LIGEYDNHKC QVWRCRFNVT 300
  301 GTILSSSGDD GCVRLWKASY ANLFKCISVV SLEKKPEKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..339] PSI-BLAST 50.0 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.3610959773142 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.30918780727915 bayes_pls_golite062009
  • protein binding
    		•  2.26925404328312 bayes_pls_golite062009
  • DNA binding
    		•  1.71685536470455 bayes_pls_golite062009
  • GTPase activity
    		•  1.66665311782591 bayes_pls_golite062009
  • snoRNA binding
    		•  1.61553185503007 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.59258100795958 bayes_pls_golite062009
  • transporter activity
    		•  1.21549336905926 bayes_pls_golite062009
  • transcription factor activity
    		•  1.08768505897883 bayes_pls_golite062009
  • protein transporter activity
    		•  0.964340340346761 bayes_pls_golite062009
    		• 0.88172763425403 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.734793983890004 bayes_pls_golite062009
  • structural molecule activity
    		•  0.721739615005709 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.676924760416604 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.658573452658359 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.577438981735303 bayes_pls_golite062009
  • signal transducer activity
    		•  0.577438981735303 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.535041400676017 bayes_pls_golite062009
  • transcription factor binding
    		•  0.489473003915035 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.359536347486199 bayes_pls_golite062009
  • receptor activity
    		•  0.322599767074871 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.30761651528651 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.182612389752591 bayes_pls_golite062009
  • hydrolase activity
    		•  0.181211933860468 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.168317261786777 bayes_pls_golite062009
  • chromatin binding
    		•  0.151977098745772 bayes_pls_golite062009
  • kinase activity
    		•  0.127621956173205 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.121872424136545 bayes_pls_golite062009
  • receptor binding
    		•  0.0390635451962911 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00585398682921312 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle