Protein Overview: rpc34

General Information:
Name(s) found:	rpc34 / SPCC290.02 [Sanger Pombe]
Description(s) found: Found 21 descriptions. SHOW ALL	DNA-directed RNA polymerase III complex subunit Rpc34 [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	301 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] cytosol [IDA] DNA-directed RNA polymerase III complex [ISS]
Biological Process:	transcription from RNA polymerase III promoter [ISS]
Molecular Function:	DNA binding [IEA] DNA-directed RNA polymerase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQLRTLPK NAKVIYEHCL KQIPNSLSQQ DLVEAIGASI SVNDLSSALN ILLSRRLLDP  60
   61 LRQGNVLVYR AVRLDEAKTV STMEGDEQIV YSFIKNSGNE GIWRKTLTLR TNLHVSVVDR 120
  121 CLKSLESKNL VKSIKSVKNP TRKIYMLYDL VPSTELTGGP WFTDQELDVE FIENLKKVIY 180
  181 RYVHSKSFPP KKAAMGPDLV WGPEYNGYPT ALQIHNWLRS TNITKVDLSL ANVISLVDVL 240
  241 IYDGKVEKRS DGASYRAIRV NNENIDAFTE SPCGNCPVSD ICDANSRVNP ITCEYLDKWL 300
  301 N

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..84]	FFAS03	1.21	No description for 2dk8A was found.
2	View Details	[85..137]	PSI-BLAST	27.522879	No description for 2yu3A was found.
3	View Details	[138..301]	Pfam	45.958607	No description for PF05158.3 was found. No confident structure predictions are available.

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
transcription regulator activity	5.23858959608048	bayes_pls_golite062009
DNA binding	4.78517210147551	bayes_pls_golite062009
nucleic acid binding	4.72059012764202	bayes_pls_golite062009
DNA-directed RNA polymerase activity	4.34522534923857	bayes_pls_golite062009
RNA polymerase activity	4.34522534923857	bayes_pls_golite062009
transcription factor activity	4.02736190679869	bayes_pls_golite062009
binding	3.37660003833383	bayes_pls_golite062009
nucleotidyltransferase activity	2.82260867370675	bayes_pls_golite062009
sequence-specific DNA binding	2.21432668306508	bayes_pls_golite062009
transferase activity	2.21031006146354	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.16473039675898	bayes_pls_golite062009
transcription activator activity	2.13702350917359	bayes_pls_golite062009
transcription repressor activity	1.9708626903609	bayes_pls_golite062009
RNA polymerase II transcription factor activity	1.50332889556988	bayes_pls_golite062009
transcription factor binding	0.752335897765285	bayes_pls_golite062009
protein binding	0.726445167461826	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	0.451714629708561	bayes_pls_golite062009

2

No functions predicted.

3

No functions predicted.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle