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Protein Overview: Spx-PA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..91] PSI-BLAST 21.69897 Solution structure of RRM domain in splicing factor 3B
2 View Details [92..225] FFAS03 5.0 CBP20, 20KDa nuclear cap-binding protein
3 View Details [226..347] PSI-BLAST 4.0 Sec24

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA binding
  • 6.73097473547076 bayes_pls_golite062009
  • 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
  • 5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
  • 4.50398990564944 bayes_pls_golite062009
  • binding
  • 4.16717332578111 bayes_pls_golite062009
  • snRNA binding
  • 4.06596327298973 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 3.11990160533699 bayes_pls_golite062009
  • U1 snRNA binding
  • 3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.93798024346416 bayes_pls_golite062009
  • transcription regulator activity
  • 2.18211199677674 bayes_pls_golite062009
  • DNA binding
  • 1.73925834998328 bayes_pls_golite062009
  • structural molecule activity
  • 1.56454315220334 bayes_pls_golite062009
  • U2 snRNA binding
  • 1.34078165372485 bayes_pls_golite062009
  • protein binding
  • 1.10597581610211 bayes_pls_golite062009
  • transcription factor activity
  • 0.873765500321315 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.591700155096213 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.294937517750882 bayes_pls_golite062009
    2
    Term Confidence Notes
  • 6.40066880991253 bayes_pls_golite062009
  • RNA binding
  • 6.32219487559982 bayes_pls_golite062009
  • mRNA binding
  • 4.87640532914983 bayes_pls_golite062009
  • nucleic acid binding
  • 4.23531598582972 bayes_pls_golite062009
  • binding
  • 4.00350364031155 bayes_pls_golite062009
  • snRNA binding
  • 3.77997752511163 bayes_pls_golite062009
  • U1 snRNA binding
  • 2.73908382552928 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 2.7133834347239 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.55628738360472 bayes_pls_golite062009
  • transcription regulator activity
  • 2.2045206027152 bayes_pls_golite062009
  • DNA binding
  • 1.74537942253096 bayes_pls_golite062009
  • structural molecule activity
  • 1.57342338925793 bayes_pls_golite062009
  • U2 snRNA binding
  • 1.09350203162237 bayes_pls_golite062009
  • protein binding
  • 1.04187682253755 bayes_pls_golite062009
  • transcription factor activity
  • 0.894914712180715 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.238420044364247 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.229644510503376 bayes_pls_golite062009
    3 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle