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Protein Overview: orb-PE, orb-PC

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..208] PSI-BLAST 35.69897 Poly(A)-binding protein
2 View Details [209..416] PSI-BLAST 42.522879 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
3 View Details [417..559] PSI-BLAST 5.045757 Sec24

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA binding
  • 4.63987691433124 bayes_pls_golite062009
  • nucleic acid binding
  • 3.64594243387558 bayes_pls_golite062009
  • mRNA binding
  • 3.54495985180603 bayes_pls_golite062009
  • binding
  • 3.00411894202318 bayes_pls_golite062009
  • protein binding
  • 2.17260848225967 bayes_pls_golite062009
  • 1.71820051628117 bayes_pls_golite062009
  • single-stranded RNA binding
  • 1.46469774223879 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 0.862661444935922 bayes_pls_golite062009
  • transcription regulator activity
  • 0.737458867828906 bayes_pls_golite062009
  • DNA binding
  • 0.691258294213766 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.599389001184667 bayes_pls_golite062009
  • translation regulator activity
  • 0.38120065819101 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.366758605553422 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.128616879457381 bayes_pls_golite062009
  • transcription activator activity
  • 0.119266921032347 bayes_pls_golite062009
  • structural molecule activity
  • 0.0829058000493267 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
  • 4.63987691433124 bayes_pls_golite062009
  • nucleic acid binding
  • 3.64594243387558 bayes_pls_golite062009
  • mRNA binding
  • 3.54495985180603 bayes_pls_golite062009
  • binding
  • 3.00411894202318 bayes_pls_golite062009
  • protein binding
  • 2.17260848225967 bayes_pls_golite062009
  • 1.71820051628117 bayes_pls_golite062009
  • single-stranded RNA binding
  • 1.46469774223879 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 0.862661444935922 bayes_pls_golite062009
  • transcription regulator activity
  • 0.737458867828906 bayes_pls_golite062009
  • DNA binding
  • 0.691258294213766 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.599389001184667 bayes_pls_golite062009
  • translation regulator activity
  • 0.38120065819101 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.366758605553422 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.128616879457381 bayes_pls_golite062009
  • transcription activator activity
  • 0.119266921032347 bayes_pls_golite062009
  • structural molecule activity
  • 0.0829058000493267 bayes_pls_golite062009
    3 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle