YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: stck-PA, FBpp0297370

General Information:
Name(s) found: FBpp0297370 [FlyBase]
stck-PA / FBpp0081334 [FlyBase]
Description(s) found:
Found 32 descriptions.
SHOW ALL
  • type=protein; loc=3R:join(4184209..4184312,4184371..4184676,4184731..4184872,4184929..4185187,4185252..4185448); ID=FBpp0297370; name=stck-PD; parent=FBgn0020249,FBtr0306260; dbxref=REFSEQ:NP_001246987,GB_protein:AFH06306,FlyBase:FBpp0297370,FlyBase_Annotation_IDs:CG7954-PD; MD5=075572e50481c226cbc0800efde55973; length=335; release=r5.56; species=Dmel; [FlyBase]
  • The gene steamer duck is referred to in FlyBase by the symbol Dmel\stck (CG7954, FBgn0020249). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:4182689..4185745. It has the cytological map location 84F15. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: zinc ion binding. There is experimental evidence that it is involved in the biological process</span>: dorsal closure; apposition of dorsal and ventral imaginal disc-derived wing surfaces; embryonic pattern specification; negative regulation of JNK cascade; head involution. 14 alleles are reported. The phenotypes of these alleles are annotated with: larva; embryonic somatic muscle; embryonic/larval somatic muscle. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 335 amino acids

    Gene Ontology:
    Cellular Component: cell leading edge [IDA]
    Biological Process: dorsal closure [IMP]
    embryonic pattern specification [IMP]
    head involution [IMP]
    apposition of dorsal and ventral imaginal disc-derived wing surfaces [IMP]
    negative regulation of JNK cascade [IGI]
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGAMHCTR CADGFEPTEK IVNSNGELWH TQCFVCAQCF RPFQDGIFYE FEGRKYCERD  60
   61 FHVLFAPCCN KCGEFVIGRV IKAMSASWHP QCFRCQLCAK ELADCGFIKN QNRALCHECN 120
  121 AKVKAEITGR YVCQKCHGLI DEEPLRFRGE VYHGYHFSCT ACGTELDSTA REVKSRPGLA 180
  181 ANDMNELYCL RCHDKMGIPI CGACRRPIEE RVVTALGKHW HVEHFVCAKC EKPFLGHRHY 240
  241 EKRGLAYCET HYHQLFGNLC FVCNQVIGGD VFTALNKAWC VHHFACSVCD TKMTQKSKFY 300
  301 EYDEKPVCKK CYDRFPNELR RRLRTAHEMT MKKNT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] PSI-BLAST 48.69897 No description for 2i13A was found.
    2 View Details [88..257] PSI-BLAST 13.154902 Transcription factor IIIA, TFIIIA
    3 View Details [258..335] FFAS03 2.83 Solution Structure of the LIM Domain of the Human Actin Binding LIM Protein 2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  4.70988788192472 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.58713908116892 bayes_pls_golite062009
  • DNA binding
    		•  4.56219307357342 bayes_pls_golite062009
  • transcription activator activity
    		•  3.52873291636993 bayes_pls_golite062009
  • transcription factor activity
    		•  3.50954949535763 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.22082323675675 bayes_pls_golite062009
  • binding
    		•  3.10743787485868 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.53101891154822 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.22104591928521 bayes_pls_golite062009
  • chromatin binding
    		•  2.18464662431232 bayes_pls_golite062009
  • protein binding
    		•  2.05530362750351 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.64349785387632 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.63161912031789 bayes_pls_golite062009
  • transcription factor binding
    		•  1.39608963544799 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.12277938241964 bayes_pls_golite062009
  • signal transducer activity
    		•  1.12277938241964 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.93314267845352 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.77874411480713 bayes_pls_golite062009
  • tubulin binding
    		•  0.744315484113484 bayes_pls_golite062009
  • microtubule binding
    		•  0.576452165256057 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.53991278722671 bayes_pls_golite062009
  • receptor activity
    		•  0.36635758793995 bayes_pls_golite062009
  • catalytic activity
    		•  0.245893663605433 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.10558148421807 bayes_pls_golite062009
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  3.84932768708444 bayes_pls_golite062009
  • DNA binding
    		•  3.45124926204188 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.34875987514951 bayes_pls_golite062009
  • actin binding
    		•  3.16654971622305 bayes_pls_golite062009
  • binding
    		•  2.8684204787273 bayes_pls_golite062009
  • transcription activator activity
    		•  2.7888666510808 bayes_pls_golite062009
  • transcription factor activity
    		•  2.74592237402384 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.5486735958299 bayes_pls_golite062009
  • protein binding
    		•  2.35367391992524 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.30646484446275 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.23212813739998 bayes_pls_golite062009
  • steroid hormone receptor binding
    		•  2.02476066647216 bayes_pls_golite062009
  • actin filament binding
    		•  1.88094478345266 bayes_pls_golite062009
  • signal transducer activity
    		•  1.80369432320498 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.80369432320498 bayes_pls_golite062009
  • nuclear hormone receptor binding
    		•  1.75066160573374 bayes_pls_golite062009
  • androgen receptor binding
    		•  1.71880332248998 bayes_pls_golite062009
  • receptor activity
    		•  1.7066474077575 bayes_pls_golite062009
  • hormone receptor binding
    		•  1.6861251260625 bayes_pls_golite062009
  • transcription factor binding
    		•  1.22761682002 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  1.1269808729848 bayes_pls_golite062009
  • vinculin binding
    		•  1.11009713416006 bayes_pls_golite062009
  • steroid hormone receptor activity
    		•  1.06131001457937 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.0478696280786 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.02819346233483 bayes_pls_golite062009
  • structural molecule activity
    		•  0.958501322313092 bayes_pls_golite062009
  • transporter activity
    		•  0.893102092384062 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.7072042577999 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.551724917261005 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.489535882040485 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.449959641856445 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.256518766904171 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.199267983374872 bayes_pls_golite062009
  • myosin binding
    		•  0.184990294745195 bayes_pls_golite062009
  • catalytic activity
    		•  0.133319360419662 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle