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Protein Overview: FBpp0311305, FBp...

General Information:
Name(s) found: FBpp0311305 [FlyBase]
FBpp0292139 [FlyBase]
FBpp0292136 [FlyBase]
Description(s) found:
Found 33 descriptions.
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  • type=protein; loc=3R:complement(2190313..2190447,2190726..2190876,2191676..2192009,2192070..2193553,2193620..2193807); ID=FBpp0311305; name=CG42724-PL; parent=FBgn0261641,FBtr0345075; dbxref=FlyBase:FBpp0311305,FlyBase_Annotation_IDs:CG42724-PL; MD5=97592a8b6183cdb1392e4aa330add1cd; length=763; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3R:complement(2190313..2190447,2190726..2190876,2191676..2192009,2192070..2193553,2193620..2193807); ID=FBpp0292139; name=CG42724-PI; parent=FBgn0261641,FBtr0303017; dbxref=FlyBase_Annotation_IDs:CG42724-PI,FlyBase:FBpp0292139,REFSEQ:NP_001189186,GB_protein:ADV37277,FlyMine:FBpp0292139,modMine:FBpp0292139; MD5=97592a8b6183cdb1392e4aa330add1cd; length=763; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3R:complement(2190313..2190447,2190726..2190876,2191676..2192009,2192070..2193553,2193620..2193807); ID=FBpp0292136; name=CG42724-PE; parent=FBgn0261641,FBtr0303014; dbxref=FlyBase_Annotation_IDs:CG42724-PE,FlyBase:FBpp0292136,FlyBase:FBpp0081232,FlyBase_Annotation_IDs:CG33097-PA,REFSEQ:NP_788585,GB_protein:AAF54130; MD5=97592a8b6183cdb1392e4aa330add1cd; length=763; release=r5.56; species=Dmel; [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 763 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    catalytic step 2 spliceosome [IDA]
    precatalytic spliceosome [IDA]
    Biological Process: RNA elongation [ISS]
    regulation of transcription, DNA-dependent [ISS]
    nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: transcription factor activity [ISS]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASLEESMD SDGASSPITK TEATESPPEA GLNGNGSGSG STSQETPNYG VAILKEKPSE  60
   61 AHRSKPFNAF SGRPIGEHTA QQQALQQQQL QQQQQPQQPQ QQAPSGANGV TGPPEIWVET 120
  121 KAEDGRSYYY HAVTRETTWS RPDGPAVKIM TQAEVEEMAK RPAQAAKTEA KAGETSVEIP 180
  181 PVSSHLTSQP PPHLMSQPPP NAAAPLLSQP PPNVRQQPPP MFQPPGMQAP PGFGQPPFCM 240
  241 PPPTYGFPGG PAPAGAPWGV GIPPWQQQQH MQDKPAKSLI IKPGVIDPAV IARAAEWSEH 300
  301 RAPDGRPYYF HAGRGESVWE KPQALRDMEA ARMAAHSGVA PAVATAPSGL PPHLLPNPMM 360
  361 HMPPGSGPPG FDPHAAFAAA AAAMKANSEN TKAAQAAALE KEAKKAAEEK RKKEEEQKKA 420
  421 AASAKQTDKS RPVTSTPIAG TPWCVVWTGD SRVFFYNPST RTSVWDRPED LLNREDVDKA 480
  481 VNERPEQLKT PQEKSAEAEQ KSGEEANQEQ AKSQVQAQQL DQVQRVDADD DDDDEVIKIR 540
  541 TESESSVEEV PTKRVRMISK SKRAEDAALE AEQRAAKERA LVPLEMRVTQ FKEMLREKDV 600
  601 SAFSTWEKEL HKIVFDPRYL LLTSKERKQV FEKYVKDRAE EERKEKRNKM RQKREDFRSL 660
  661 MEEARLHGKS SFSEFSQRNA KDERYRAIEK VRERESLFNE YIVEVRRREK EDKLLKKEQP 720
  721 LASRLQHKCT TQNTKIHKSN SIENHLYNTL DGLFRPPSAI AVH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..161] FFAS03 2.37 Splicing factor prp40
    2 View Details [162..310] PSI-BLAST 3.39794 Sec24
    3 View Details [311..512] FFAS03 2.27 Splicing factor prp40
    4 View Details [513..560] deduced N/A No confident structure predictions are available.
    5 View Details [561..634] PSI-BLAST 12.09691 No description for 2dodA was found.
    6 View Details [635..763] PSI-BLAST 13.0 No description for 2e71A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.182048695645 bayes_pls_golite062009
  • binding
    		•  3.08386768818066 bayes_pls_golite062009
  • transcription activator activity
    		•  2.05338377709657 bayes_pls_golite062009
  • transcription factor binding
    		•  1.94857953695695 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.79381302696181 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.67777735708173 bayes_pls_golite062009
  • protein binding
    		•  1.17020309171645 bayes_pls_golite062009
  • catalytic activity
    		•  0.231344568578849 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.135918306396444 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  3.182048695645 bayes_pls_golite062009
  • binding
    		•  3.08386768818066 bayes_pls_golite062009
  • transcription activator activity
    		•  2.05338377709657 bayes_pls_golite062009
  • transcription factor binding
    		•  1.94857953695695 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.79381302696181 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.67777735708173 bayes_pls_golite062009
  • protein binding
    		•  1.17020309171645 bayes_pls_golite062009
  • catalytic activity
    		•  0.231344568578849 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.135918306396444 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle