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Protein Overview: rhi-PA

General Information:
Name(s) found: rhi-PA / FBpp0086056 [FlyBase]
Description(s) found:
Found 28 descriptions.
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  • The gene rhino is referred to in FlyBase by the symbol Dmel\rhi (CG10683, FBgn0004400). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:13515994..13521018. It has the cytological map location 54D2. Based on sequence similarity, it is predicted to have molecular function</span>: chromatin binding. There is experimental evidence that it is involved in the biological process</span>: chorion-containing eggshell pattern formation. 19 alleles are reported. The phenotypes of these alleles are annotated with: egg; egg chamber; dorsal appendage; nurse cell. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 418 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    chromatin [IEA]
    Biological Process: chorion-containing eggshell pattern formation [IMP]
    chromatin assembly or disassembly [IEA]
    Molecular Function: chromatin binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRNHQRPNL GLVDAPPNDH VEEYVVEKIL GKRFVNGRPQ VLVKWSGFPN ENNTWEPLEN  60
   61 VGNCMKLVSD FESEVFRLHR KAAAKSVGKS KSSPSSSGPL ITENGPSSSK KTQQHSKSVQ 120
  121 AKNTAGMSKM NQKKGKNIKK TAGKIKDIEN YPKTQMPSTS QVSTDSTEVF DGNPSATTTN 180
  181 MIKSPRIQSL FSDLNLIEPT KDKDVGDTSL KTPPKSRRLI EFPQREDAPL SSKHVSPMLI 240
  241 RKESQPLQSS CTDDSDLGES SSSMSLPTVS STSSEKSIKV TKSEPKTLGQ IKFSSRSSDG 300
  301 GHAASSLGAP KEGDIGLDLS GSDSMDSEVE SMRRCPRRKR KKTYPDWKFP EMTKPFGVNR 360
  361 GLDLDKILHC YQMNDDLFMF VTWKGCSSID AVHINDIKEA YPLQIIKYFE SLRIIVPK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] PSI-BLAST 8.522879 No description for 2dntA was found.
    2 View Details [94..269] deduced N/A No confident structure predictions are available.
    3 View Details [270..418] PSI-BLAST 18.0 Heterochromatin protein 1, HP1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.63081545253584 bayes_pls_golite062009
  • chromatin binding
    		•  2.26856644581646 bayes_pls_golite062009
  • protein binding
    		•  1.63976398283458 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.08928222818715 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.627858578903821 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.63081545253584 bayes_pls_golite062009
  • chromatin binding
    		•  2.26856644581646 bayes_pls_golite062009
  • protein binding
    		•  1.63976398283458 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.08928222818715 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.627858578903821 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle